RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CAMK2AQ9UQM7 478 aa16.63■□□□□ 0.25
SHKBP1-201ENST00000291842 C2orf72A6NCS6 295 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 CDC40O60508 579 aaKnown RBP eCLIP16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC25A12O75746 678 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 RENP00797 406 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 BGLAPP02818 100 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 PTHLHP12272 177 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC6A8P48029 635 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 MRPL28Q13084 256 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 ALKBH1Q13686 389 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 FCN2Q15485 313 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 CCDC92Q53HC0 331 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 FAM205BPQ63HN1 556 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 OR8K3Q8NH51 312 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 FGF21Q9NSA1 209 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 VPS13AQ96RL7 3174 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 ARID1BQ8NFD5 2236 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 CEP192Q8TEP8 1941 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 AKR7A2O43488 359 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 NUDT21O43809 227 aaKnown RBP16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 ABHD16AO95870 558 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 HLA-DQA2P01906 255 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 GZMKP49863 264 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC6A19Q695T7 634 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC29A4Q7RTT9 530 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 OR51A4Q8NGJ6 313 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 OR1N1Q8NGS0 311 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 THAP3Q8WTV1 239 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 PHF21AQ96BD5 680 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC25A38Q96DW6 304 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 CACNG6Q9BXT2 260 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 OR11A1Q9GZK7 315 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 BEX1Q9HBH7 125 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 V9GY05 133 aa16.62■□□□□ 0.25
SHKBP1-201ENST00000291842 TRABD2BA6NFA1 517 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 AIPO00170 330 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 TRIM3O75382 744 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 SYPP08247 313 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 BTG1P62324 171 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 TIGD3Q6B0B8 471 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 STAC2Q6ZMT1 411 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC35D2Q76EJ3 337 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 DUSP19Q8WTR2 217 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 ATOH1Q92858 354 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 TCF7L1Q9HCS4 588 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 KCNG2Q9UJ96 466 aa16.61■□□□□ 0.25
SHKBP1-201ENST00000291842 A0A1B0GX78 115 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 ALG1L2C9J202 215 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 PDCD5O14737 125 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 DHFRP00374 187 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 GP1BBP13224 206 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 DPP4P27487 766 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 GDNFP39905 211 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 DCAF7P61962 342 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 RPS15P62841 145 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 MAB21L1Q13394 359 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 Q499Y3 187 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 SIX5Q8N196 739 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 METTL21AQ8WXB1 218 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 NSMAFQ92636 917 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 MFRPQ9BY79 579 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 MED28Q9H204 178 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 TRAV36DV7A0A075B6V5 113 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 SUSD5O60279 629 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 RAD1O60671 282 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 ITGA10O75578 1167 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 C1QBP02746 253 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 MAS1P04201 325 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 GLB1P16278 677 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 ADRA2CP18825 462 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 ALOX5APP20292 161 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 ERP29P30040 261 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 SNTB2Q13425 540 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 EMC4Q5J8M3 183 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 EEF1A1P5Q5VTE0 462 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 BEST4Q8NFU0 473 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 INTS14Q96SY0 518 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 PTDSS2Q9BVG9 487 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 SLCO1C1Q9NYB5 712 aa16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 ATXN7L1Q9ULK2 861 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 MRPS17Q9Y2R5 130 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 TNRC18O15417 2968 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-201ENST00000291842 XKRYO14609 159 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 BCAT2O15382 392 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 PGCP20142 388 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 S100A1P23297 94 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 ETFDHQ16134 617 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 KDM8Q8N371 416 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 ZNF676Q8N7Q3 588 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 OR2G2Q8NGZ5 317 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 ZFAND1Q8TCF1 268 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 SMIM4Q8WVI0 70 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 ADAMTS14Q8WXS8 1223 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 PHYHIPQ92561 330 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 DACT3Q96B18 629 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 ZNF501Q96CX3 271 aaPredicted RBP16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 SLC41A2Q96JW4 573 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 KLHL15Q96M94 604 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 NPAS1Q99742 590 aa16.59■□□□□ 0.25
SHKBP1-201ENST00000291842 NKIRAS2Q9NYR9 191 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms