RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TSPAN19P0C672 248 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 OPRM1P35372 400 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 AQP2P41181 271 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 EEF1A1P5Q5VTE0 462 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 UEVLDQ8IX04 471 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 MOSPD2Q8NHP6 518 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 CENPNQ96H22 339 aaPredicted RBP26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 ZNF629Q9UEG4 869 aaPredicted RBP26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 CACNA1CQ13936 2221 aa26.32■■□□□ 1.8
LIMCH1-211ENST00000509638 UNC119BA6NIH7 251 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 DVL2O14641 736 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 HLA-DOBP13765 273 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 POU2F1P14859 743 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 ZNF43P17038 809 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 GSSP48637 474 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 ARHGDIAP52565 204 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 SRSF1Q07955 248 aaKnown RBP eCLIP26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 FHL1Q13642 323 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 C1DQ13901 141 aaKnown RBP26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 OR6K3Q8NGY3 331 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 GNPDA2Q8TDQ7 276 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 C12orf49Q9H741 205 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 MAGED1Q9Y5V3 778 aaPredicted RBP26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 FREM1Q5H8C1 2179 aa26.31■■□□□ 1.8
LIMCH1-211ENST00000509638 TRAF3IP2O43734 574 aaPredicted RBP26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 IL18BPO95998 194 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 GASTP01350 101 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 ZNF23P17027 643 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 ELF3P78545 371 aaPredicted RBP26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 CREB3L2Q70SY1 520 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 NUFIP2Q7Z417 695 aaKnown RBP26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 PXKQ7Z7A4 578 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 GALNT5Q7Z7M9 940 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 MRGPRGQ86SM5 289 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 EPHX4Q8IUS5 362 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 LIX1LQ8IVB5 337 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 ITLN2Q8WWU7 325 aaPredicted RBP26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 ASB5Q8WWX0 329 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 GTPBP3Q969Y2 492 aaKnown RBP26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 ZNF385AQ96PM9 386 aaKnown RBP26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 FEVQ99581 238 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 MCCC2Q9HCC0 563 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 FANCFQ9NPI8 374 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 NOSIPQ9Y314 301 aaKnown RBP26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 NOX1Q9Y5S8 564 aa26.3■■□□□ 1.8
LIMCH1-211ENST00000509638 LOC102725191A0A1B0GVB3 256 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ZP4Q12836 540 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 TSPAN31Q12999 210 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ZBED5Q49AG3 693 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 RELL2Q8NC24 303 aaPredicted RBP26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ANKK1Q8NFD2 765 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 OR5K1Q8NHB7 308 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 FANK1Q8TC84 345 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 STARD4Q96DR4 205 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 NRBF2Q96F24 287 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 TNFRSF13CQ96RJ3 184 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 MGAT4BQ9UQ53 548 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 SIGLEC7Q9Y286 467 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ADGRG4Q8IZF6 3080 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 F13BP05160 661 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 RNF224P0DH78 156 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ANKDD1AQ495B1 522 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ALG10Q5BKT4 473 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 BTLAQ7Z6A9 289 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ZIC4Q8N9L1 334 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 ICA1LQ8NDH6 482 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 DGCR6LQ9BY27 220 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 OAZ3Q9UMX2 235 aa26.29■■□□□ 1.8
LIMCH1-211ENST00000509638 EEF1E1-BLOC1S5C9J1V9 151 aa26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 EEF1E1O43324 174 aaKnown RBP26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 SMNDC1O75940 238 aaKnown RBP eCLIP26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 ZNF26P17031 533 aaPredicted RBP26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 PRKACGP22612 351 aa26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 CDSNQ15517 529 aa26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 CASP12Q6UXS9 341 aa26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 ZC3HAV1Q7Z2W4 902 aaKnown RBP26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 PQLC1Q8N2U9 271 aa26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 FAM26EQ8N5C1 309 aa26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 NIPSNAP1Q9BPW8 284 aa26.28■■□□□ 1.8
LIMCH1-211ENST00000509638 FAM90A27PA6NNH2 459 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 G3V2T6 193 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 ADAP00813 363 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 NTF4P34130 210 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 PRPS1P60891 318 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 RCN1Q15293 331 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 IGFN1Q86VF2 1251 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 HIPK1Q86Z02 1210 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 ZDHHC13Q8IUH4 622 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 ZNF808Q8N4W9 903 aaPredicted RBP26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 CA5BP1Q8WTZ4 195 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 TMEM45BQ96B21 275 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 INIPQ9NRY2 104 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 MED29Q9NX70 200 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 KIF17Q9P2E2 1029 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 PROCRQ9UNN8 238 aa26.27■■□□□ 1.8
LIMCH1-211ENST00000509638 ALPK2Q86TB3 2170 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 CLEC18AA5D8T8 446 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 SAC3D1A6NKF1 404 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 CLDN17P56750 224 aa26.26■■□□□ 1.79
LIMCH1-211ENST00000509638 FXYD6P3P58550 94 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms