RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 PCOLCE2Q9UKZ9 415 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 FAM96BQ9Y3D0 163 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 A0A1B0GVT2 93 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 IGLON5A6NGN9 336 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ANXA2P2A6NMY6 339 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 B4DGG1 531 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 NDUFS4O43181 175 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GAPDHP04406 335 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 S100A6P06703 90 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CXCL12P48061 93 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM115Q12893 351 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 SNTB2Q13425 540 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CRTC2Q53ET0 693 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 C3P1Q6ZMU1 363 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ZBTB44Q8NCP5 570 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 SNX33Q8WV41 574 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MS4A3Q96HJ5 214 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CLCC1Q96S66 551 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TRIM36Q9NQ86 728 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 NLGN3Q9NZ94 848 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 DNAJC27Q9NZQ0 273 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 PFDN2Q9UHV9 154 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 PHOX2AO14813 284 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TSPAN4O14817 238 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF208O43345 1280 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TLX2O43763 284 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 AK1P00568 194 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CRYBA1P05813 215 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 IGFBP3P17936 291 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ATF4P18848 351 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 AHRP35869 848 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GDNFP39905 211 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GATMP50440 423 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CAPZA1P52907 286 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 RGS8P57771 180 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CD83Q01151 205 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 RHOUQ7L0Q8 258 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MEPCEQ7L2J0 689 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TIGD4Q8IY51 512 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 OR4D9Q8NGE8 314 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MITD1Q8WV92 249 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 C1orf147Q96MC9 270 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 IL23AQ9NPF7 189 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 A0A0B4J2E0 115 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 A0A1B0GX12 115 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 SLC9B1P1A6NJY1 282 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 F8W036 122 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 GATCO43716 136 aaKnown RBP4.9□□□□□ -1.62
SYNE1-220ENST00000471834 KLK1P06870 262 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 PGAM2P15259 253 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 EDNRAP25101 427 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 ALDH3B1P43353 468 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 SGSHP51688 502 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 BTN3A2P78410 334 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 C22orf39Q6P5X5 142 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 LRRTM1Q86UE6 522 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 C17orf64Q86WR6 236 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 TM4SF19Q96DZ7 209 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 DERL3Q96Q80 235 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 CA10Q9NS85 328 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 PISDQ9UG56 409 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 FOXI3A8MTJ6 420 aaPredicted RBP4.9□□□□□ -1.62
SYNE1-220ENST00000471834 J3KTA2 159 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 RGS9O75916 674 aaPredicted RBP4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR2T7P0C7T2 308 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 VSIG10L2P0DP72 767 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 SFTPCP11686 197 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 PTGS2P35354 604 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 EEF1A1P68104 462 aaKnown RBP4.9□□□□□ -1.62
SYNE1-220ENST00000471834 ST3GAL3Q11203 375 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM52BQ4KMG9 183 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 TXNDC8Q6A555 127 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 COMMD7Q86VX2 200 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 LHFPL1Q86WI0 220 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 RBM45Q8IUH3 476 aaKnown RBP4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR56A1Q8NGH5 318 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR2A12Q8NGT7 310 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR2A1Q8NGT9 310 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR2T27Q8NH04 317 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 INTS12Q96CB8 462 aaKnown RBP4.9□□□□□ -1.62
SYNE1-220ENST00000471834 ELP4Q96EB1 424 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR5B2Q96R09 309 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 PYGO2Q9BRQ0 406 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 TRPM7Q96QT4 1865 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 ANTXRLA6NF34 631 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 WIPF3A6NGB9 483 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 EFCAB7A8K855 629 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 B3GALT2O43825 422 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 C6orf47O95873 294 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 POU3F2P20265 443 aaPredicted RBP4.9□□□□□ -1.62
SYNE1-220ENST00000471834 PITPNAQ00169 270 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 SLC3A1Q07837 685 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 CRMP1Q14194 572 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 PRSS58Q8IYP2 241 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 COMMD1Q8N668 190 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 TTC9BQ8N6N2 239 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 ACOT4Q8N9L9 421 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 AVL9Q8NBF6 648 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR4D10Q8NGI6 311 aa4.9□□□□□ -1.62
SYNE1-220ENST00000471834 OR6S1Q8NH40 331 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms