RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 TMEM239Q8WW34 195 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 FGF11Q92914 225 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 SNAPC3Q92966 411 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 ZC3HAV1LQ96H79 300 aaKnown RBP11.58□□□□□ -0.56
DDX39A-202ENST00000324340 MAP6Q96JE9 813 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 KLHDC3Q9BQ90 382 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 CNIH4Q9P003 139 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 RABL2AQ9UBK7 228 aaPredicted RBP11.58□□□□□ -0.56
DDX39A-202ENST00000324340 REV1Q9UBZ9 1251 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 PSORS1C1Q9UIG5 152 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 CEP250Q9BV73 2442 aa11.58□□□□□ -0.56
DDX39A-202ENST00000324340 A0A0G2JMP0 313 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 LEUTXA8MZ59 168 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 M0R082 166 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 NKX2-8O15522 239 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 CDC40O60508 579 aaKnown RBP eCLIP11.57□□□□□ -0.56
DDX39A-202ENST00000324340 IGF2P01344 180 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 CDK1P06493 297 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 CCL3P10147 92 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 PNMTP11086 282 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 DBTP11182 482 aaKnown RBP11.57□□□□□ -0.56
DDX39A-202ENST00000324340 POU2F1P14859 743 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 GADD45AP24522 165 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 FPR3P25089 353 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 ITGA3P26006 1051 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 PTBP1P26599 531 aaKnown RBP eCLIP11.57□□□□□ -0.56
DDX39A-202ENST00000324340 FMO3P31513 532 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 LIPAP38571 399 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 RFX2P48378 723 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 SLC9A3P48764 834 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 CCR4P51679 360 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 CTBP2P56545 445 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 ALDH6A1Q02252 535 aaKnown RBP11.57□□□□□ -0.56
DDX39A-202ENST00000324340 FOXD4Q12950 439 aaPredicted RBP11.57□□□□□ -0.56
DDX39A-202ENST00000324340 TSPAN31Q12999 210 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 ATP1A1-AS1Q5TC04 95 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 RRM2BQ7LG56 351 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 ZNF227Q86WZ6 799 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 NRMQ8IXM6 262 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 PIGXQ8TBF5 258 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 GNPDA2Q8TDQ7 276 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 GIMAP1Q8WWP7 306 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 GTPBP3Q969Y2 492 aaKnown RBP11.57□□□□□ -0.56
DDX39A-202ENST00000324340 GPA33Q99795 319 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 SLC19A3Q9BZV2 496 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 UCK2Q9BZX2 261 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 PROK2Q9HC23 129 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 KRCC1Q9NPI7 259 aaPredicted RBP11.57□□□□□ -0.56
DDX39A-202ENST00000324340 C12orf4Q9NQ89 552 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 ING3Q9NXR8 418 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 PPP4R1LQ9P1A2 415 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 SSUH2Q9Y2M2 353 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 MED31Q9Y3C7 131 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 MSRB2Q9Y3D2 182 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 AHCTF1Q8WYP5 2266 aa11.57□□□□□ -0.56
DDX39A-202ENST00000324340 CNOT1A5YKK6 2376 aaKnown RBP11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TUBAL3A6NHL2 446 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 ZNF891A8MT65 544 aaPredicted RBP11.56□□□□□ -0.56
DDX39A-202ENST00000324340 PIP5K1CO60331 668 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TP53P04637 393 aaPredicted RBP11.56□□□□□ -0.56
DDX39A-202ENST00000324340 OSMP13725 252 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 HOXB1P14653 301 aaPredicted RBP11.56□□□□□ -0.56
DDX39A-202ENST00000324340 CHMP24386 653 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 ITPKBP27987 946 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 CYB561P49447 251 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 IRF3Q14653 427 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 QPRTQ15274 297 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TOMM34Q15785 309 aaPredicted RBP11.56□□□□□ -0.56
DDX39A-202ENST00000324340 ABHD17BQ5VST6 288 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 NXNL2Q5VZ03 156 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TMPRSS11FQ6ZWK6 438 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 CYP4Z2PQ8N1L4 340 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 GALNT16Q8N428 558 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 FADS6Q8N9I5 356 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 WDSUB1Q8N9V3 476 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 ZNF248Q8NDW4 579 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 ZNF563Q8TA94 476 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 SNIP1Q8TAD8 396 aaKnown RBP11.56□□□□□ -0.56
DDX39A-202ENST00000324340 LRRC20Q8TCA0 184 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 DEDD2Q8WXF8 326 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TMEM234Q8WY98 164 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 ST8SIA1Q92185 356 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TMEM41AQ96HV5 264 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 HRASLS5Q96KN8 279 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 HYLS1Q96M11 299 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 COPS4Q9BT78 406 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TMEM43Q9BTV4 400 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 DPH1Q9BZG8 443 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 RIBC2Q9H4K1 309 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 MEPEQ9NQ76 525 aaPredicted RBP11.56□□□□□ -0.56
DDX39A-202ENST00000324340 ABI3Q9P2A4 366 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 TMEM5Q9Y2B1 443 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 HRH3Q9Y5N1 445 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 DOCK10Q96BY6 2186 aa11.56□□□□□ -0.56
DDX39A-202ENST00000324340 IGKV1D-42A0A075B6H8 117 aa11.55□□□□□ -0.56
DDX39A-202ENST00000324340 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.55□□□□□ -0.56
DDX39A-202ENST00000324340 IQCMA0A1B0GVH7 501 aa11.55□□□□□ -0.56
DDX39A-202ENST00000324340 C2orf72A6NCS6 295 aa11.55□□□□□ -0.56
DDX39A-202ENST00000324340 ARGFXA6NJG6 315 aa11.55□□□□□ -0.56
DDX39A-202ENST00000324340 CLCA1A8K7I4 914 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms