RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CHAF1BQ13112 559 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SLC35D3Q5M8T2 416 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 MAMDC2Q7Z304 686 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SRFBP1Q8NEF9 429 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 OR14A16Q8NHC5 309 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 WBP2Q969T9 261 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF689Q96CS4 500 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 C5orf34Q96MH7 638 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 GAL3ST4Q96RP7 486 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZSCAN5AQ9BUG6 496 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF416Q9BWM5 594 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 SMDT1Q9H4I9 107 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 PCDHB16Q9NRJ7 776 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CYTL1Q9NRR1 136 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 PPP1R14DQ9NXH3 145 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 CKLFQ9UBR5 152 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 B4GALT6Q9UBX8 382 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ANAPC1Q9H1A4 1944 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 FAM227AF5H4B4 570 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TMPRSS11DO60235 418 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CER1O95813 267 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MT-ND5P03915 603 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ATP1B2P14415 290 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 RPS15P62841 145 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 KCNAB1Q14722 419 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TMEM35AQ53FP2 167 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 RTP2Q5QGT7 225 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 NXPE4Q6UWF7 544 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TSPAN33Q86UF1 283 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ARL14Q8N4G2 192 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 KLHL36Q8N4N3 616 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 EDARADDQ8WWZ3 215 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 F2RL3Q96RI0 385 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 AIF1LQ9BQI0 150 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 SLC25A21Q9BQT8 299 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 VN1R3Q9BXE9 311 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MYEF2Q9P2K5 600 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 PLXNA2O75051 1894 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 LOC100509620A0A075B734 347 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CDHR4A6H8M9 788 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 OR4C45A6NMZ5 311 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF879B4DU55 563 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 I3L521 148 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 COCHO43405 550 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 DNAJB6O75190 326 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 RPS2P15880 293 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GSK3AP49840 483 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MAPK14Q16539 360 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 SLC6A19Q695T7 634 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MBOAT1Q6ZNC8 495 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 PUSL1Q8N0Z8 303 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 DTX3Q8N9I9 347 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 OR5AK2Q8NH90 309 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GLYATL2Q8WU03 294 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ASB12Q8WXK4 309 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MAL2Q969L2 176 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 OR51V1Q9H2C8 321 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 SFXN1Q9H9B4 322 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 PLEKHM1Q9Y4G2 1056 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 LRRN3E7EW58 273 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 E9PI62 339 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TEX46H3BTG2 121 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 RNF13O43567 381 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 UPK3AO75631 287 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TBX18O95935 607 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ACAA1P09110 424 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 C6orf120Q7Z4R8 191 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MEIOBQ8N635 442 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 METTL27Q8N6F8 245 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 OR8G5Q8NG78 346 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 NFKBIDQ8NI38 313 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 NUS1Q96E22 293 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 LRRN3Q9H3W5 708 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 PARPBPQ9NWS1 579 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 NKIRAS2Q9NYR9 191 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ACTR10Q9NZ32 417 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 PCDH10Q9P2E7 1040 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ATPIF1Q9UII2 106 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 STARD10Q9Y365 291 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 TDRD15B5MCY1 1934 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 A8MV72 311 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GRXCR1A8MXD5 290 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 RPL36A-HNRNPH2H7BZ11 118 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 IMPA2O14732 288 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 IGFBP1P08833 259 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ADH7P40394 386 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 SMAD3P84022 425 aaKnown RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 DGCR2P98153 550 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 DUSP8Q13202 625 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 CCL14Q16627 93 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 AMZ1Q400G9 498 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GDF6Q6KF10 455 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 WDR88Q6ZMY6 472 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 ATAD1Q8NBU5 361 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 OR2AK2Q8NG84 335 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 LMAN2LQ9H0V9 348 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 MED28Q9H204 178 aa4.91□□□□□ -1.62
SYNE1-220ENST00000471834 GPN1Q9HCN4 374 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.91□□□□□ -1.62
SYNE1-220ENST00000471834 KCNE5Q9UJ90 142 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms