RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 LINC00052Q96N35 136 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 LMAN2LQ9H0V9 348 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 C20orf85Q9H1P6 137 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 C11orf49Q9H6J7 331 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 FAM60AQ9NP50 221 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 WASH6PQ9NQA3 447 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 CYSLTR2Q9NS75 346 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 C2orf42Q9NWW7 574 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 FBXO4Q9UKT5 387 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 KLHDC2Q9Y2U9 406 aa7.95□□□□□ -1.14
USP40-203ENST00000427112 DCDC2BA2VCK2 349 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 CARNS1A5YM72 827 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 OR6C68A6NDL8 312 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 CTNSO60931 367 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 APBB3O95704 486 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 PBX2P40425 430 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 MAP2K6P52564 334 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 GFOD2Q3B7J2 385 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 BICRALQ6AI39 1079 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 TMEM205Q6UW68 189 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZNF627Q7L945 461 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 GLB1L2Q8IW92 636 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 MS4A15Q8N5U1 240 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZNF485Q8NCK3 441 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 OR51D1Q8NGF3 324 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 PHOSPHO1Q8TCT1 267 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 RSC1A1Q92681 617 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 RERGQ96A58 199 aaPredicted RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 SFXN2Q96NB2 322 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 APOOQ9BUR5 198 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZMAT5Q9UDW3 170 aaKnown RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 CES1P1Q9UKY3 287 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 DOCK7Q96N67 2140 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 COL4A3Q01955 1670 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 C17orf113A0A1B0GUU1 675 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 H7C2Y5 167 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 L7N2F9 121 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 SSX5O60225 188 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 CDC40O60508 579 aaKnown RBP eCLIP7.94□□□□□ -1.14
USP40-203ENST00000427112 SDC3O75056 442 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 IGF2P01344 180 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 IGKV1D-16P01601 117 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 FAM157BP0CG42 384 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 EPXP11678 715 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 FGF9P31371 208 aaPredicted RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 EFNB2P52799 333 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZNF33BQ06732 778 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 GRM7Q14831 915 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 C4orf46Q504U0 113 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ESCO2Q56NI9 601 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZCCHC12Q6PEW1 402 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 CBLN3Q6UW01 205 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 STX12Q86Y82 276 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 TCTE3Q8IZS6 198 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 STK35Q8TDR2 534 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 TNFAIP8L1Q8WVP5 186 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 KISS1RQ969F8 398 aaPredicted RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 MS4A4EQ96PG1 132 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 SPACA5Q96QH8 159 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 MESP1Q9BRJ9 268 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 PNO1Q9NRX1 252 aaKnown RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 LHX6Q9UPM6 363 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 SIGLEC7Q9Y286 467 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 SPACA6W5XKT8 324 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 BHLHE40O14503 412 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 GOSR2O14653 212 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 OIP5O43482 229 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 PKLRP30613 574 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 EFNB1P98172 346 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 RUNX3Q13761 415 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 GALEQ14376 348 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 PON3Q15166 354 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 FAM122CQ6P4D5 195 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 LRRN1Q6UXK5 716 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 PLCZ1Q86YW0 608 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 SLC35F2Q8IXU6 374 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZNF676Q8N7Q3 588 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZNF321PQ8N8H1 164 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 TSEN15Q8WW01 171 aaKnown RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 RBM18Q96H35 190 aaKnown RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 ARHGDIGQ99819 225 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 OR8D2Q9GZM6 311 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 WDR76Q9H967 626 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 NOX3Q9HBY0 568 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 TAS2R10Q9NYW0 307 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 PRR13Q9NZ81 148 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 ZNF230Q9UIE0 474 aaPredicted RBP7.94□□□□□ -1.14
USP40-203ENST00000427112 ERVK-19Q9WJR5 959 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 SLC22A13Q9Y226 551 aa7.94□□□□□ -1.14
USP40-203ENST00000427112 TRAV18A0A075B6X5 111 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 PRSS38A1L453 326 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 ELOA3DA6NLF2 546 aaPredicted RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 ZFPL1O95159 310 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 EGFP01133 1207 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 RAF1P04049 648 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 UGT2B7P16662 529 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 F8A1P23610 371 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 CDK2P24941 298 aa7.93□□□□□ -1.14
USP40-203ENST00000427112 GBX2P52951 348 aaPredicted RBP7.93□□□□□ -1.14
USP40-203ENST00000427112 DECR1Q16698 335 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms