RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SEZ6L2Q6UXD5 910 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 DNM1P46Q6ZS02 220 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 AAED1Q7RTV5 226 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 HIPK1Q86Z02 1210 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 CCDC103Q8IW40 242 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 ANKFN1Q8N957 763 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 ZNF511Q8NB15 262 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 OR52P1PQ8NH57 321 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 STK35Q8TDR2 534 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 PROX1Q92786 737 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 ZNF524Q96C55 264 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 AMBRA1Q9C0C7 1298 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 OR11A1Q9GZK7 315 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 PNPOQ9NVS9 261 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 ZIM2Q9NZV7 527 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 CDC42EP3Q9UKI2 254 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 RAB21Q9UL25 225 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 RASD1Q9Y272 281 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 B3GALT5Q9Y2C3 310 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 GPR45Q9Y5Y3 372 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 JMJD1CQ15652 2540 aa6.22□□□□□ -1.41
VPS41-208ENST00000448833 CENPVL1A0A0U1RR11 272 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 LIPT2A6NK58 231 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 AQP7P3A6NL99 342 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ELOA3DA6NLF2 546 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 A8MV72 311 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 E7EQL1 145 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ZNF587BE7ETH6 402 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 PDLIM1O00151 329 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 NDUFS8O00217 210 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 SDHDO14521 159 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 UBDO15205 165 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ADAM11O75078 769 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 SNNO75324 88 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 ERLIN1O75477 346 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 CRYAAP02489 173 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 GSNP06396 782 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ERCC1P07992 297 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 CHRM4P08173 479 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 VIMP08670 466 aaKnown RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 ALDOCP09972 364 aaKnown RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 PPIBP23284 216 aaKnown RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 GTF2E2P29084 291 aaKnown RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 EPHA3P29320 983 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 POLR2JP52435 117 aaKnown RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 EFNA4P52798 201 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 NME5P56597 212 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 DSTNP60981 165 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 UBE2NP61088 152 aaKnown RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 STX1BP61266 288 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 LOXL1Q08397 574 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 FUT5Q11128 374 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 FADDQ13158 208 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ELOA3BQ3SY89 546 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 CHRFAM7AQ494W8 412 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 NET1Q7Z628 596 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 GPAT4Q86UL3 456 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 PRIMA1Q86XR5 153 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 KRT73Q86Y46 540 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 CCDC36Q8IYA8 594 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 MIER2Q8N344 545 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 CADM2Q8N3J6 435 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 FAM169BQ8N8A8 192 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ANKRD42Q8N9B4 389 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ZNF540Q8NDQ6 660 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 BHLHE22Q8NFJ8 381 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 IL17RDQ8NFM7 739 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ELOA3Q8NG57 546 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 OR10H5Q8NGA6 315 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 OR9K2Q8NGE7 335 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 MFSD8Q8NHS3 518 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 SLC38A5Q8WUX1 472 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 FAM168AQ92567 244 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 NEUROG1Q92886 237 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 TNFRSF13CQ96RJ3 184 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 SPATA5L1Q9BVQ7 753 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 SPATA9Q9BWV2 254 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 CACNG6Q9BXT2 260 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 MANSC1Q9H8J5 431 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 EVA1AQ9H8M9 152 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 TPT1P8Q9HAU6 139 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 C12orf10Q9HB07 376 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 MYOZ1Q9NP98 299 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 SLC17A5Q9NRA2 495 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 SDR39U1Q9NRG7 319 aaPredicted RBP6.21□□□□□ -1.42
VPS41-208ENST00000448833 YAE1D1Q9NRH1 226 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 SLC7A10Q9NS82 523 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 NPAP1Q9NZP6 1156 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 RPS6KB2Q9UBS0 482 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 LPAR3Q9UBY5 353 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 CORO2BQ9UQ03 480 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 FKBP7Q9Y680 259 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ATP23Q9Y6H3 246 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 DSPPQ9NZW4 1301 aa6.21□□□□□ -1.42
VPS41-208ENST00000448833 ARFGEF3Q5TH69 2177 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ALPK2Q86TB3 2170 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 TMEM120BA0PK00 339 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 TMEM72A0PK05 275 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 PRAMEF27A3QJZ7 478 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 CLDN24A6NM45 220 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms