RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	AOS1	Q06624	347 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	WTM2	Q12206	467 aa		4.18	□□□□□ -1.74
NUP85	YJR042W	RVB2	Q12464	471 aa	Known RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	RRP36	Q12481	300 aa	Predicted RBP	4.18	□□□□□ -1.74
NUP85	YJR042W	DNF2	Q12675	1612 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	CBP3	P21560	335 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	ATP12	P22135	325 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	MCD4	P36051	919 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	TAF5	P38129	798 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	PSY4	P38193	441 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	UBS1	P38290	277 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	DYS1	P38791	387 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	MXR1	P40029	184 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	CNN1	P43618	361 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	SAE2	P46946	345 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	IML2	P47031	731 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	MDE1	P47095	244 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	YML6	P51998	286 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	CNM67	P53865	581 aa	Known RBP	4.17	□□□□□ -1.74
NUP85	YJR042W	YLR345W	Q06137	509 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	ATG33	Q06485	197 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	YPR071W	Q12346	211 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	CEX1	Q12453	761 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	STE6	P12866	1290 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	COX11	P19516	300 aa	Known RBP	4.17	□□□□□ -1.74
NUP85	YJR042W	SIT1	P39980	628 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	UTP7	P40055	554 aa	Known RBP	4.17	□□□□□ -1.74
NUP85	YJR042W	DJP1	P40564	432 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	RRN7	P40992	514 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	YJL055W	P47044	245 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	YDR131C	Q03899	556 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	RRG1	Q12167	365 aa	Predicted RBP	4.17	□□□□□ -1.74
NUP85	YJR042W	SPO21	Q12411	609 aa		4.17	□□□□□ -1.74
NUP85	YJR042W	HSH49	Q99181	213 aa	Predicted RBP	4.17	□□□□□ -1.74
NUP85	YJR042W	RPP0	P05317	312 aa	Known RBP	4.16	□□□□□ -1.74
NUP85	YJR042W	PFK1	P16861	987 aa	Known RBP	4.16	□□□□□ -1.74
NUP85	YJR042W	MDJ1	P35191	511 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	SHM1	P37292	490 aa	Predicted RBP	4.16	□□□□□ -1.74
NUP85	YJR042W	VPS41	P38959	992 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	VHR1	P40522	640 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	MPH1	P40562	993 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	CAF16	P43569	289 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	ALG2	P43636	503 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
NUP85	YJR042W	RSM26	P47141	266 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	CPR6	P53691	371 aa	Known RBP	4.16	□□□□□ -1.74
NUP85	YJR042W	SPO71	Q03868	1245 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	TCB1	Q12466	1186 aa		4.16	□□□□□ -1.74
NUP85	YJR042W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.74	not detected
NUP85	YJR042W	SNF1	P06782	633 aa	Known RBP	4.15	□□□□□ -1.74
NUP85	YJR042W	CMP2	P14747	604 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	NCP1	P16603	691 aa	Known RBP	4.15	□□□□□ -1.74
NUP85	YJR042W	NPL6	P32832	435 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	EXO5	P38289	585 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	AXL1	P40851	1208 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	ATP22	P50273	684 aa	Predicted RBP	4.15	□□□□□ -1.74
NUP85	YJR042W	RBG2	P53295	368 aa	Known RBP	4.15	□□□□□ -1.74
NUP85	YJR042W	PEX13	P80667	386 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	HLR1	Q04429	423 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	RKM4	Q12504	494 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	RMP1	Q12530	201 aa		4.15	□□□□□ -1.74
NUP85	YJR042W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	RIP-Chip
NUP85	YJR042W	MRP7	P12687	371 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	GUK1	P15454	187 aa	Known RBP	4.15	□□□□□ -1.75
NUP85	YJR042W	DAL7	P21826	554 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	ERG3	P32353	365 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	BCK2	P33306	851 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
NUP85	YJR042W	DEF1	P35732	738 aa	Known RBP	4.15	□□□□□ -1.75
NUP85	YJR042W	FAT1	P38225	669 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	CIT3	P43635	486 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	YNR063W	P53749	607 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	YLR287C	Q05881	355 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	GUD1	Q07729	489 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	TRM8	Q12009	286 aa		4.15	□□□□□ -1.75
NUP85	YJR042W	RPS21B	Q3E754	87 aa	Known RBP	4.15	□□□□□ -1.75
NUP85	YJR042W	RED1	P14291	827 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	RER1	P25560	188 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	AFG2	P32794	780 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	YKL107W	P34251	309 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TBS1	P38114	1094 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	SAP30	P38429	201 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	SET2	P46995	733 aa	Known RBP	4.14	□□□□□ -1.75
NUP85	YJR042W	ENT3	P47160	408 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	MRPL19	P53875	158 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	RSC3	Q06639	885 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	HIM1	Q06674	414 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	YOR296W	Q08748	1289 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-DR6	P0CX70	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-ER1	P0CX71	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-LR2	P0CX72	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-PL	P0CX73	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-JR1	P0CX74	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-LR3	P0CX75	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	TY1A-ML2	P0CX76	440 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	HOP1	P20050	605 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	ACE2	P21192	770 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	GSY1	P23337	708 aa		4.14	□□□□□ -1.75
NUP85	YJR042W	NPP1	P25353	742 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 58.5 ms