RNA–Protein interactions for RNA: ENST00000641587.1

PHGDH-222, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-222	ENST00000641587	HIRA	P54198	1017 aa	Predicted RBP	13.15	□□□□□ -0.3
PHGDH-222	ENST00000641587	ZNF408	Q9H9D4	720 aa		13.15	□□□□□ -0.3
PHGDH-222	ENST00000641587	ZNRF3	Q9ULT6	936 aa		13.15	□□□□□ -0.3
PHGDH-222	ENST00000641587	COL4A1	P02462	1669 aa		13.15	□□□□□ -0.31
PHGDH-222	ENST00000641587	MAPK8IP3	Q9UPT6	1336 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	CCDC85C	A6NKD9	419 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	YDJC	A8MPS7	323 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	AIMP1	Q12904	312 aa	Known RBP	13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	RALBP1	Q15311	655 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	SLC10A5	Q5PT55	438 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	DLK2	Q6UY11	383 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	DPP8	Q6V1X1	898 aa	Predicted RBP	13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	SAPCD2	Q86UD0	394 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	BEGAIN	Q9BUH8	593 aa		13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.14	□□□□□ -0.31
PHGDH-222	ENST00000641587	KIAA2012	Q0VF49	1180 aa		13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	KRT24	Q2M2I5	525 aa		13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	CIAPIN1	Q6FI81	312 aa		13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	NLRP10	Q86W26	655 aa		13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	XAGE3	Q8WTP9	111 aa		13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	TMX4	Q9H1E5	349 aa	Predicted RBP	13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	LRRC37A	A6NMS7	1700 aa		13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	DDX60	Q8IY21	1712 aa	Known RBP	13.13	□□□□□ -0.31
PHGDH-222	ENST00000641587	COPS6	Q7L5N1	327 aa		13.12	□□□□□ -0.31
PHGDH-222	ENST00000641587	MPND	Q8N594	471 aa		13.12	□□□□□ -0.31
PHGDH-222	ENST00000641587	SUPT20H	Q8NEM7	779 aa		13.12	□□□□□ -0.31
PHGDH-222	ENST00000641587	ZIC5	Q96T25	663 aa		13.12	□□□□□ -0.31
PHGDH-222	ENST00000641587	BCL2L13	Q9BXK5	485 aa		13.12	□□□□□ -0.31
PHGDH-222	ENST00000641587	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.12	□□□□□ -0.31
PHGDH-222	ENST00000641587	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.12	□□□□□ -0.31
PHGDH-222	ENST00000641587	MAP2K2	P36507	400 aa		13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	RIPK4	P57078	832 aa		13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	GRAP	Q13588	217 aa		13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	SP8	Q8IXZ3	490 aa		13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	GRAPL	Q8TC17	118 aa	Predicted RBP	13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	VPS33B	Q9H267	617 aa		13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	PGAP2	Q9UHJ9	254 aa		13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	TRMT112	Q9UI30	125 aa	Known RBP	13.11	□□□□□ -0.31
PHGDH-222	ENST00000641587	BBOX1	O75936	387 aa		13.1	□□□□□ -0.31
PHGDH-222	ENST00000641587	EGFR	P00533	1210 aa		13.1	□□□□□ -0.31
PHGDH-222	ENST00000641587	DDX46	Q7L014	1031 aa	Known RBP	13.1	□□□□□ -0.31
PHGDH-222	ENST00000641587	MICALL2	Q8IY33	904 aa		13.1	□□□□□ -0.31
PHGDH-222	ENST00000641587	MCOLN1	Q9GZU1	580 aa		13.1	□□□□□ -0.31
PHGDH-222	ENST00000641587	CNOT7	Q9UIV1	285 aa	Known RBP	13.1	□□□□□ -0.31
PHGDH-222	ENST00000641587	SH3TC1	Q8TE82	1336 aa		13.1	□□□□□ -0.31
PHGDH-222	ENST00000641587	POLR2A	P24928	1970 aa	Known RBP	13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	SLC34A2	O95436	690 aa		13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	TCIRG1	Q13488	830 aa		13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	SAMD7	Q7Z3H4	446 aa		13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	USP48	Q86UV5	1035 aa		13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	CFAP44	Q96MT7	982 aa		13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	DBNDD1	Q9H9R9	158 aa		13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	CDHR2	Q9BYE9	1310 aa		13.09	□□□□□ -0.31
PHGDH-222	ENST00000641587	PSMD14	O00487	310 aa		13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	TMPO	P42166	694 aa	Known RBP	13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	BRPF1	P55201	1214 aa	Predicted RBP	13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	MLLT1	Q03111	559 aa	Predicted RBP	13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	TNIP1	Q15025	636 aa		13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	HSP90AB3P	Q58FF7	597 aa		13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	CELF1	Q92879	486 aa	Known RBP	13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	CHPF2	Q9P2E5	772 aa		13.08	□□□□□ -0.32
PHGDH-222	ENST00000641587	SCN9A	Q15858	1988 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	ADM5	C9JUS6	153 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	CCER2	I3L3R5	266 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	RIMBP2	O15034	1052 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	HUNK	P57058	714 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	RTL5	Q5HYW3	569 aa	Predicted RBP	13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	CDC37L1	Q7L3B6	337 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	CCDC146	Q8IYE0	955 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	ZC3H15	Q8WU90	426 aa	Known RBP	13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	HHIPL1	Q96JK4	782 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	PNN	Q9H307	717 aa	Known RBP	13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	KCNQ5	Q9NR82	932 aa		13.07	□□□□□ -0.32
PHGDH-222	ENST00000641587	ATP5J2-PTCD1	G3V325	749 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587		H7C1D1	291 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	RGS19	P49795	217 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	DGKZ	Q13574	1117 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	NEUROD2	Q15784	382 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	FAM89A	Q96GI7	184 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	MRS2	Q9HD23	443 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	POLL	Q9UGP5	575 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	LAS1L	Q9Y4W2	734 aa	Known RBP	13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	RTL9	Q8NET4	1388 aa		13.06	□□□□□ -0.32
PHGDH-222	ENST00000641587	TNRC18	O15417	2968 aa	Predicted RBP	13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	CA12	O43570	354 aa		13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	GPSM2	P81274	684 aa		13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	DOK7	Q18PE1	504 aa		13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	WASHC4	Q2M389	1173 aa		13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	RBM26	Q5T8P6	1007 aa	Known RBP	13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	BABAM1	Q9NWV8	329 aa		13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	ASTN2	O75129	1339 aa	Predicted RBP	13.05	□□□□□ -0.32
PHGDH-222	ENST00000641587	FAM155A	B1AL88	458 aa	Predicted RBP	13.04	□□□□□ -0.32
PHGDH-222	ENST00000641587	C6orf229	H3BNL8	230 aa		13.04	□□□□□ -0.32
PHGDH-222	ENST00000641587	ECE2	O60344	883 aa		13.04	□□□□□ -0.32
PHGDH-222	ENST00000641587	NOG	Q13253	232 aa		13.04	□□□□□ -0.32
PHGDH-222	ENST00000641587	KRT26	Q7Z3Y9	468 aa		13.04	□□□□□ -0.32
PHGDH-222	ENST00000641587	ISCA1	Q9BUE6	129 aa		13.04	□□□□□ -0.32
PHGDH-222	ENST00000641587	CHL1	O00533	1208 aa		13.03	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms