RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CCDC57Q2TAC2 916 aa24.79■■□□□ 1.56
CLN3-250ENST00000636839 C3orf67Q6ZVT6 689 aa24.79■■□□□ 1.56
CLN3-250ENST00000636839 ATG9AQ7Z3C6 839 aa24.79■■□□□ 1.56
CLN3-250ENST00000636839 SSFA2P28290 1259 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 TFCP2Q12800 502 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 GYS1P13807 737 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 MX1P20591 662 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 ITGA6P23229 1130 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 TTC22Q5TAA0 569 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 ERC1Q8IUD2 1116 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 EAF2Q96CJ1 260 aaPredicted RBP24.78■■□□□ 1.56
CLN3-250ENST00000636839 CAMKK2Q96RR4 588 aa24.78■■□□□ 1.56
CLN3-250ENST00000636839 SEC24BO95487 1268 aa24.77■■□□□ 1.56
CLN3-250ENST00000636839 IFIT5Q13325 482 aaKnown RBP24.77■■□□□ 1.56
CLN3-250ENST00000636839 NFIXQ14938 502 aa24.77■■□□□ 1.56
CLN3-250ENST00000636839 RGL2O15211 777 aa24.76■■□□□ 1.55
CLN3-250ENST00000636839 BMP2KLQ5H9B9 411 aa24.76■■□□□ 1.55
CLN3-250ENST00000636839 DEFB132Q7Z7B7 95 aa24.76■■□□□ 1.55
CLN3-250ENST00000636839 AACSQ86V21 672 aa24.76■■□□□ 1.55
CLN3-250ENST00000636839 CLASRPQ8N2M8 674 aaKnown RBP24.76■■□□□ 1.55
CLN3-250ENST00000636839 CCDC8Q9H0W5 538 aaPredicted RBP24.76■■□□□ 1.55
CLN3-250ENST00000636839 TLR7Q9NYK1 1049 aaKnown RBP24.76■■□□□ 1.55
CLN3-250ENST00000636839 NBPF5PQ86XG9 351 aaPredicted RBP24.75■■□□□ 1.55
CLN3-250ENST00000636839 COL23A1Q86Y22 540 aaPredicted RBP24.75■■□□□ 1.55
CLN3-250ENST00000636839 OSBPL3Q9H4L5 887 aa24.74■■□□□ 1.55
CLN3-250ENST00000636839 SEC31BQ9NQW1 1179 aa24.74■■□□□ 1.55
CLN3-250ENST00000636839 ABCC12Q96J65 1359 aa24.74■■□□□ 1.55
CLN3-250ENST00000636839 EYA2O00167 538 aa24.74■■□□□ 1.55
CLN3-250ENST00000636839 GTF2E1P29083 439 aaPredicted RBP24.74■■□□□ 1.55
CLN3-250ENST00000636839 ANO8Q9HCE9 1232 aaPredicted RBP24.73■■□□□ 1.55
CLN3-250ENST00000636839 STAP2Q9UGK3 403 aa24.73■■□□□ 1.55
CLN3-250ENST00000636839 DDX60Q8IY21 1712 aaKnown RBP24.73■■□□□ 1.55
CLN3-250ENST00000636839 MSH5O43196 834 aa24.73■■□□□ 1.55
CLN3-250ENST00000636839 TAF7LQ5H9L4 462 aa24.73■■□□□ 1.55
CLN3-250ENST00000636839 ANKRD18BA2A2Z9 1011 aa24.72■■□□□ 1.55
CLN3-250ENST00000636839 MYH3P11055 1940 aa24.71■■□□□ 1.55
CLN3-250ENST00000636839 IFIT2P09913 472 aaKnown RBP24.71■■□□□ 1.55
CLN3-250ENST00000636839 SDSP20132 328 aa24.71■■□□□ 1.55
CLN3-250ENST00000636839 PI4K2BQ8TCG2 481 aa24.7■■□□□ 1.54
CLN3-250ENST00000636839 MAP4K4O95819 1239 aaPredicted RBP24.69■■□□□ 1.54
CLN3-250ENST00000636839 IL15P40933 162 aaPredicted RBP24.69■■□□□ 1.54
CLN3-250ENST00000636839 TNNI3KQ59H18 835 aa24.69■■□□□ 1.54
CLN3-250ENST00000636839 TPTE2Q6XPS3 522 aa24.69■■□□□ 1.54
CLN3-250ENST00000636839 FPGT-TNNI3KV9GXZ4 949 aa24.69■■□□□ 1.54
CLN3-250ENST00000636839 CIAO1O76071 339 aa24.69■■□□□ 1.54
CLN3-250ENST00000636839 SLC10A5Q5PT55 438 aa24.69■■□□□ 1.54
CLN3-250ENST00000636839 LDHAL6AQ6ZMR3 332 aa24.69■■□□□ 1.54
CLN3-250ENST00000636839 NYXQ9GZU5 481 aa24.69■■□□□ 1.54
CLN3-250ENST00000636839 PNPLA7Q6ZV29 1317 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 COL4A1P02462 1669 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 TM4SF1P30408 202 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 RIPOR2Q9Y4F9 1068 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 COL24A1Q17RW2 1714 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 TIMM10P62072 90 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 DDR1Q08345 913 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 CCDC152Q4G0S7 254 aa24.68■■□□□ 1.54
CLN3-250ENST00000636839 TUBGCP6Q96RT7 1819 aa24.67■■□□□ 1.54
CLN3-250ENST00000636839 DBNLQ9UJU6 430 aaKnown RBP24.67■■□□□ 1.54
CLN3-250ENST00000636839 CARMIL3Q8ND23 1372 aa24.67■■□□□ 1.54
CLN3-250ENST00000636839 SF3B2Q13435 895 aaKnown RBP24.66■■□□□ 1.54
CLN3-250ENST00000636839 NPHP1O15259 732 aa24.66■■□□□ 1.54
CLN3-250ENST00000636839 DBNDD2Q9BQY9 259 aa24.66■■□□□ 1.54
CLN3-250ENST00000636839 CNNM1Q9NRU3 951 aa24.65■■□□□ 1.54
CLN3-250ENST00000636839 ECHDC1Q9NTX5 307 aa24.65■■□□□ 1.54
CLN3-250ENST00000636839 SF3B3Q15393 1217 aaKnown RBP24.64■■□□□ 1.54
CLN3-250ENST00000636839 PRR5LQ6MZQ0 368 aa24.64■■□□□ 1.54
CLN3-250ENST00000636839 TBC1D9Q6ZT07 1266 aa24.64■■□□□ 1.54
CLN3-250ENST00000636839 CEP126Q9P2H0 1117 aa24.64■■□□□ 1.54
CLN3-250ENST00000636839 RGPD3A6NKT7 1758 aaPredicted RBP24.64■■□□□ 1.53
CLN3-250ENST00000636839 RGPD4Q7Z3J3 1758 aa24.64■■□□□ 1.53
CLN3-250ENST00000636839 SERPINB2P05120 415 aa24.64■■□□□ 1.53
CLN3-250ENST00000636839 HMGB2P26583 209 aaKnown RBP24.64■■□□□ 1.53
CLN3-250ENST00000636839 SLC15A2Q16348 729 aa24.64■■□□□ 1.53
CLN3-250ENST00000636839 MSL1Q68DK7 614 aa24.64■■□□□ 1.53
CLN3-250ENST00000636839 CNBD1Q8NA66 436 aa24.64■■□□□ 1.53
CLN3-250ENST00000636839 HELBQ8NG08 1087 aaPredicted RBP24.64■■□□□ 1.53
CLN3-250ENST00000636839 NEUROD6Q96NK8 337 aa24.64■■□□□ 1.53
CLN3-250ENST00000636839 HSP90B1P14625 803 aaKnown RBP24.63■■□□□ 1.53
CLN3-250ENST00000636839 BAG6P46379 1132 aa24.63■■□□□ 1.53
CLN3-250ENST00000636839 LAMB2P55268 1798 aa24.63■■□□□ 1.53
CLN3-250ENST00000636839 TRIM6-TRIM34B2RNG4 842 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 POLRMTO00411 1230 aaKnown RBP24.62■■□□□ 1.53
CLN3-250ENST00000636839 METTL24Q5JXM2 366 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 RILPL2Q969X0 211 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 NLRP3Q96P20 1036 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 RIC1Q4ADV7 1423 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 AOX1Q06278 1338 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 TAF1P21675 1872 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 PDGFDQ9GZP0 370 aaPredicted RBP24.62■■□□□ 1.53
CLN3-250ENST00000636839 FBXO3Q9UK99 471 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 TTC41PQ6P2S7 1318 aa24.62■■□□□ 1.53
CLN3-250ENST00000636839 A0A1B0GUL7 405 aa24.61■■□□□ 1.53
CLN3-250ENST00000636839 SNAP23O00161 211 aa24.61■■□□□ 1.53
CLN3-250ENST00000636839 CELF1Q92879 486 aaKnown RBP24.61■■□□□ 1.53
CLN3-250ENST00000636839 RTL9Q8NET4 1388 aa24.6■■□□□ 1.53
CLN3-250ENST00000636839 ADORA1P30542 326 aa24.6■■□□□ 1.53
CLN3-250ENST00000636839 VGLL2Q8N8G2 317 aa24.6■■□□□ 1.53
CLN3-250ENST00000636839 MPHOSPH8Q99549 860 aa24.6■■□□□ 1.53
CLN3-250ENST00000636839 BOLA2Q9H3K6 86 aa24.6■■□□□ 1.53
CLN3-250ENST00000636839 NDUFB9Q9Y6M9 179 aa24.6■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms