RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 CLEC17AQ6ZS10 378 aa25.64■■□□□ 1.7
LIME1-210ENST00000621325 TTC14Q96N46 770 aa25.64■■□□□ 1.7
LIME1-210ENST00000621325 IL15P40933 162 aaPredicted RBP25.64■■□□□ 1.69
LIME1-210ENST00000621325 ACSBG1Q96GR2 724 aa25.64■■□□□ 1.69
LIME1-210ENST00000621325 LARP6Q9BRS8 491 aaKnown RBP25.64■■□□□ 1.69
LIME1-210ENST00000621325 PCCAP05165 728 aaPredicted RBP25.63■■□□□ 1.69
LIME1-210ENST00000621325 NECTIN1Q15223 517 aa25.63■■□□□ 1.69
LIME1-210ENST00000621325 ZNF589Q86UQ0 364 aaPredicted RBP25.63■■□□□ 1.69
LIME1-210ENST00000621325 SNRKQ9NRH2 765 aa25.63■■□□□ 1.69
LIME1-210ENST00000621325 RBM8AQ9Y5S9 174 aaKnown RBP25.63■■□□□ 1.69
LIME1-210ENST00000621325 NRAPQ86VF7 1730 aa25.63■■□□□ 1.69
LIME1-210ENST00000621325 DOT1LQ8TEK3 1739 aa25.62■■□□□ 1.69
LIME1-210ENST00000621325 CASTP20810 708 aaKnown RBP25.62■■□□□ 1.69
LIME1-210ENST00000621325 MAP4K1Q92918 833 aa25.62■■□□□ 1.69
LIME1-210ENST00000621325 MARCH10Q8NA82 808 aaPredicted RBP25.62■■□□□ 1.69
LIME1-210ENST00000621325 ZBTB38Q8NAP3 1195 aaPredicted RBP25.62■■□□□ 1.69
LIME1-210ENST00000621325 HAUS7Q99871 368 aa25.62■■□□□ 1.69
LIME1-210ENST00000621325 MED23Q9ULK4 1368 aa25.62■■□□□ 1.69
LIME1-210ENST00000621325 AK2P54819 239 aa25.61■■□□□ 1.69
LIME1-210ENST00000621325 DDX46Q7L014 1031 aaKnown RBP25.61■■□□□ 1.69
LIME1-210ENST00000621325 KCNB2Q92953 911 aa25.61■■□□□ 1.69
LIME1-210ENST00000621325 CDCA7Q9BWT1 371 aaPredicted RBP25.61■■□□□ 1.69
LIME1-210ENST00000621325 CCDC57Q2TAC2 916 aa25.61■■□□□ 1.69
LIME1-210ENST00000621325 NLRP10Q86W26 655 aa25.61■■□□□ 1.69
LIME1-210ENST00000621325 JAKMIP1Q96N16 626 aaKnown RBP25.61■■□□□ 1.69
LIME1-210ENST00000621325 TBC1D2BQ9UPU7 963 aa25.61■■□□□ 1.69
LIME1-210ENST00000621325 THRAP3Q9Y2W1 955 aaKnown RBP25.6■■□□□ 1.69
LIME1-210ENST00000621325 KCNJ4P48050 445 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 FOXD4L5Q5VV16 416 aaPredicted RBP25.59■■□□□ 1.69
LIME1-210ENST00000621325 CREB3L3Q68CJ9 461 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 FOXD4L4Q8WXT5 416 aaPredicted RBP25.59■■□□□ 1.69
LIME1-210ENST00000621325 CHAMP1Q96JM3 812 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 SPATA31A5Q5VU36 1347 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 SPATA31A7Q8IWB4 1347 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 CIAO1O76071 339 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 COL9A3Q14050 684 aaPredicted RBP25.59■■□□□ 1.69
LIME1-210ENST00000621325 RUFY3Q7L099 469 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 INTS4Q96HW7 963 aaKnown RBP25.59■■□□□ 1.69
LIME1-210ENST00000621325 GPR108Q9NPR9 543 aa25.59■■□□□ 1.69
LIME1-210ENST00000621325 PLA2G12BQ9BX93 195 aa25.58■■□□□ 1.69
LIME1-210ENST00000621325 A0A1B0GUL7 405 aa25.57■■□□□ 1.68
LIME1-210ENST00000621325 MCTP1Q6DN14 999 aa25.57■■□□□ 1.68
LIME1-210ENST00000621325 SEC62Q99442 399 aaKnown RBP25.57■■□□□ 1.68
LIME1-210ENST00000621325 TAF6LQ9Y6J9 622 aa25.57■■□□□ 1.68
LIME1-210ENST00000621325 ZNF609O15014 1411 aa25.57■■□□□ 1.68
LIME1-210ENST00000621325 CSF1RP07333 972 aa25.57■■□□□ 1.68
LIME1-210ENST00000621325 SLC27A2O14975 620 aa25.56■■□□□ 1.68
LIME1-210ENST00000621325 DZIP3Q86Y13 1208 aaKnown RBP25.56■■□□□ 1.68
LIME1-210ENST00000621325 TAF5LO75529 589 aa25.56■■□□□ 1.68
LIME1-210ENST00000621325 CCDC129Q6ZRS4 1044 aa25.56■■□□□ 1.68
LIME1-210ENST00000621325 ZSWIM6Q9HCJ5 1215 aa25.56■■□□□ 1.68
LIME1-210ENST00000621325 GOLIM4O00461 696 aa25.55■■□□□ 1.68
LIME1-210ENST00000621325 IL6STP40189 918 aaPredicted RBP25.55■■□□□ 1.68
LIME1-210ENST00000621325 SLFNL1Q499Z3 407 aa25.55■■□□□ 1.68
LIME1-210ENST00000621325 CEP126Q9P2H0 1117 aa25.55■■□□□ 1.68
LIME1-210ENST00000621325 ZKSCAN1P17029 563 aaPredicted RBP25.55■■□□□ 1.68
LIME1-210ENST00000621325 GOLGA6L22H0YM25 854 aa25.54■■□□□ 1.68
LIME1-210ENST00000621325 TOM1O60784 492 aa25.54■■□□□ 1.68
LIME1-210ENST00000621325 HSP90AB3PQ58FF7 597 aa25.54■■□□□ 1.68
LIME1-210ENST00000621325 LIMCH1Q9UPQ0 1083 aa25.54■■□□□ 1.68
LIME1-210ENST00000621325 LARGE1O95461 756 aa25.54■■□□□ 1.68
LIME1-210ENST00000621325 IFIT5Q13325 482 aaKnown RBP25.54■■□□□ 1.68
LIME1-210ENST00000621325 TM6SF1Q9BZW5 370 aa25.54■■□□□ 1.68
LIME1-210ENST00000621325 PDRG1Q9NUG6 133 aa25.54■■□□□ 1.68
LIME1-210ENST00000621325 INTS5Q6P9B9 1019 aaKnown RBP25.53■■□□□ 1.68
LIME1-210ENST00000621325 KBTBD3Q8NAB2 608 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 TTLL11Q8NHH1 800 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 GREM2Q9H772 168 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 PAG1Q9NWQ8 432 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 TRMT112Q9UI30 125 aaKnown RBP25.53■■□□□ 1.68
LIME1-210ENST00000621325 CYP46A1Q9Y6A2 500 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 UBN2Q6ZU65 1347 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 CDHR2Q9BYE9 1310 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 JCADQ9P266 1359 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 SLIT2O94813 1529 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 ATP6V1AP38606 617 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 TAF7LQ5H9L4 462 aa25.53■■□□□ 1.68
LIME1-210ENST00000621325 ADORA1P30542 326 aa25.52■■□□□ 1.68
LIME1-210ENST00000621325 A0A0U1RQG5 324 aaPredicted RBP25.52■■□□□ 1.68
LIME1-210ENST00000621325 BRD1O95696 1058 aa25.52■■□□□ 1.68
LIME1-210ENST00000621325 VPS53Q5VIR6 699 aa25.52■■□□□ 1.68
LIME1-210ENST00000621325 IRS4O14654 1257 aaPredicted RBP25.51■■□□□ 1.67
LIME1-210ENST00000621325 EIF5P55010 431 aaKnown RBP25.51■■□□□ 1.67
LIME1-210ENST00000621325 ITPK1Q13572 414 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 SKOR2Q2VWA4 1001 aaPredicted RBP25.51■■□□□ 1.67
LIME1-210ENST00000621325 RFX7Q2KHR2 1363 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 LOC102724428A0A0B4J2F2 783 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 ERVV-1B6SEH8 477 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 KCNQ2O43526 872 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 DTNBO60941 627 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 PTMSP20962 102 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 ITGA6P23229 1130 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 SIK1P57059 783 aa25.51■■□□□ 1.67
LIME1-210ENST00000621325 RPAP1Q9BWH6 1393 aaPredicted RBP25.5■■□□□ 1.67
LIME1-210ENST00000621325 IFIT1P09914 478 aaKnown RBP25.5■■□□□ 1.67
LIME1-210ENST00000621325 CRKLP46109 303 aaKnown RBP25.5■■□□□ 1.67
LIME1-210ENST00000621325 CTSWP56202 376 aa25.5■■□□□ 1.67
LIME1-210ENST00000621325 BARGINQ6ZT62 677 aa25.5■■□□□ 1.67
LIME1-210ENST00000621325 CCDC87Q9NVE4 849 aa25.5■■□□□ 1.67
LIME1-210ENST00000621325 NUP98P52948 1817 aa25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms