RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 MMP10P09238 476 aa20.07■□□□□ 0.8
SS18-226ENST00000585241 TNRC6CQ9HCJ0 1690 aaKnown RBP20.07■□□□□ 0.8
SS18-226ENST00000585241 LRP5O75197 1615 aa20.06■□□□□ 0.8
SS18-226ENST00000585241 GTF2E1P29083 439 aaPredicted RBP20.06■□□□□ 0.8
SS18-226ENST00000585241 PTPN12Q05209 780 aaKnown RBP20.06■□□□□ 0.8
SS18-226ENST00000585241 FAM161AQ3B820 660 aa20.06■□□□□ 0.8
SS18-226ENST00000585241 MSL1Q68DK7 614 aa20.05■□□□□ 0.8
SS18-226ENST00000585241 PARP3Q9Y6F1 533 aa20.05■□□□□ 0.8
SS18-226ENST00000585241 ST5P78524 1137 aa20.04■□□□□ 0.8
SS18-226ENST00000585241 CCDC152Q4G0S7 254 aa20.04■□□□□ 0.8
SS18-226ENST00000585241 HSP90AB4PQ58FF6 505 aa20.04■□□□□ 0.8
SS18-226ENST00000585241 C3orf67Q6ZVT6 689 aa20.04■□□□□ 0.8
SS18-226ENST00000585241 GREM2Q9H772 168 aa20.04■□□□□ 0.8
SS18-226ENST00000585241 FBXO3Q9UK99 471 aa20.04■□□□□ 0.8
SS18-226ENST00000585241 KLRG2A4D1S0 409 aaPredicted RBP20.03■□□□□ 0.8
SS18-226ENST00000585241 RAB11FIP3O75154 756 aa20.03■□□□□ 0.8
SS18-226ENST00000585241 NLRP3Q96P20 1036 aa20.03■□□□□ 0.8
SS18-226ENST00000585241 PA2G4Q9UQ80 394 aaKnown RBP20.03■□□□□ 0.8
SS18-226ENST00000585241 CHMP3Q9Y3E7 222 aa20.03■□□□□ 0.8
SS18-226ENST00000585241 SURF6O75683 361 aaKnown RBP20.02■□□□□ 0.8
SS18-226ENST00000585241 ITGA6P23229 1130 aa20.02■□□□□ 0.8
SS18-226ENST00000585241 NUCB1Q02818 461 aa20.02■□□□□ 0.8
SS18-226ENST00000585241 IFIT5Q13325 482 aaKnown RBP20.02■□□□□ 0.8
SS18-226ENST00000585241 R3HDM1Q15032 1099 aaKnown RBP20.02■□□□□ 0.8
SS18-226ENST00000585241 CCDC57Q2TAC2 916 aa20.02■□□□□ 0.8
SS18-226ENST00000585241 CRY2Q49AN0 593 aa20.02■□□□□ 0.8
SS18-226ENST00000585241 EXOC6BQ9Y2D4 811 aa20.02■□□□□ 0.8
SS18-226ENST00000585241 ANKRD31Q8N7Z5 1873 aa20.02■□□□□ 0.8
SS18-226ENST00000585241 ANKRD18BA2A2Z9 1011 aa20.01■□□□□ 0.79
SS18-226ENST00000585241 NPHP1O15259 732 aa20.01■□□□□ 0.79
SS18-226ENST00000585241 PDZRN3Q9UPQ7 1066 aa20.01■□□□□ 0.79
SS18-226ENST00000585241 CIAO1O76071 339 aa20■□□□□ 0.79
SS18-226ENST00000585241 CCDC24Q8N4L8 307 aa20■□□□□ 0.79
SS18-226ENST00000585241 KLHDC4Q8TBB5 520 aa20■□□□□ 0.79
SS18-226ENST00000585241 BRIP1Q9BX63 1249 aa20■□□□□ 0.79
SS18-226ENST00000585241 MTFR1LQ9H019 292 aa20■□□□□ 0.79
SS18-226ENST00000585241 EYA2O00167 538 aa19.99■□□□□ 0.79
SS18-226ENST00000585241 ERC1Q8IUD2 1116 aa19.99■□□□□ 0.79
SS18-226ENST00000585241 KIF1BPQ96EK5 621 aa19.99■□□□□ 0.79
SS18-226ENST00000585241 CCDC85AQ96PX6 553 aaPredicted RBP19.99■□□□□ 0.79
SS18-226ENST00000585241 G3BP1Q13283 466 aaKnown RBP eCLIP19.98■□□□□ 0.79
SS18-226ENST00000585241 ATG9AQ7Z3C6 839 aa19.98■□□□□ 0.79
SS18-226ENST00000585241 CHD1LQ86WJ1 897 aa19.98■□□□□ 0.79
SS18-226ENST00000585241 C10orf71Q711Q0 1435 aa19.98■□□□□ 0.79
SS18-226ENST00000585241 COL4A1P02462 1669 aa19.97■□□□□ 0.79
SS18-226ENST00000585241 ANKRD45Q5TZF3 282 aa19.97■□□□□ 0.79
SS18-226ENST00000585241 RHPN1Q8TCX5 695 aa19.97■□□□□ 0.79
SS18-226ENST00000585241 ZNF594Q96JF6 807 aaPredicted RBP19.97■□□□□ 0.79
SS18-226ENST00000585241 CDC5LQ99459 802 aaKnown RBP19.97■□□□□ 0.79
SS18-226ENST00000585241 LRRCC1Q9C099 1032 aa19.97■□□□□ 0.79
SS18-226ENST00000585241 SEC31BQ9NQW1 1179 aa19.97■□□□□ 0.79
SS18-226ENST00000585241 SASH1O94885 1247 aa19.96■□□□□ 0.79
SS18-226ENST00000585241 HOXA10P31260 410 aaPredicted RBP19.96■□□□□ 0.79
SS18-226ENST00000585241 IL15P40933 162 aaPredicted RBP19.96■□□□□ 0.79
SS18-226ENST00000585241 SIL1Q9H173 461 aa19.96■□□□□ 0.79
SS18-226ENST00000585241 ZBTB7AO95365 584 aa19.95■□□□□ 0.78
SS18-226ENST00000585241 TAF7LQ5H9L4 462 aa19.95■□□□□ 0.78
SS18-226ENST00000585241 SGIP1Q9BQI5 828 aa19.95■□□□□ 0.78
SS18-226ENST00000585241 RIPOR2Q9Y4F9 1068 aa19.95■□□□□ 0.78
SS18-226ENST00000585241 KIF13BQ9NQT8 1826 aa19.95■□□□□ 0.78
SS18-226ENST00000585241 COL11A2P13942 1736 aaPredicted RBP19.94■□□□□ 0.78
SS18-226ENST00000585241 PSDA5PKW4 1024 aaPredicted RBP19.94■□□□□ 0.78
SS18-226ENST00000585241 PDE6BP35913 854 aa19.94■□□□□ 0.78
SS18-226ENST00000585241 OS9Q13438 667 aaPredicted RBP19.94■□□□□ 0.78
SS18-226ENST00000585241 LRRC24Q50LG9 513 aa19.94■□□□□ 0.78
SS18-226ENST00000585241 PUS3Q9BZE2 481 aaKnown RBP19.94■□□□□ 0.78
SS18-226ENST00000585241 LNPKQ9C0E8 428 aa19.94■□□□□ 0.78
SS18-226ENST00000585241 PDE4AP27815 886 aa19.93■□□□□ 0.78
SS18-226ENST00000585241 IGHMBP2P38935 993 aaKnown RBP19.93■□□□□ 0.78
SS18-226ENST00000585241 GRAPQ13588 217 aa19.93■□□□□ 0.78
SS18-226ENST00000585241 LDHAL6AQ6ZMR3 332 aa19.93■□□□□ 0.78
SS18-226ENST00000585241 DDX46Q7L014 1031 aaKnown RBP19.93■□□□□ 0.78
SS18-226ENST00000585241 ANKRD18AQ8IVF6 992 aa19.93■□□□□ 0.78
SS18-226ENST00000585241 GRAPLQ8TC17 118 aaPredicted RBP19.93■□□□□ 0.78
SS18-226ENST00000585241 CRAMP1Q96RY5 1269 aa19.93■□□□□ 0.78
SS18-226ENST00000585241 GPR108Q9NPR9 543 aa19.93■□□□□ 0.78
SS18-226ENST00000585241 SMARCA5O60264 1052 aaPredicted RBP19.92■□□□□ 0.78
SS18-226ENST00000585241 SRGNP10124 158 aa19.92■□□□□ 0.78
SS18-226ENST00000585241 CELF1Q92879 486 aaKnown RBP19.92■□□□□ 0.78
SS18-226ENST00000585241 BSDC1Q9NW68 430 aaPredicted RBP19.92■□□□□ 0.78
SS18-226ENST00000585241 SALL3Q9BXA9 1300 aa19.92■□□□□ 0.78
SS18-226ENST00000585241 TAF1P21675 1872 aa19.91■□□□□ 0.78
SS18-226ENST00000585241 APBB1O00213 710 aa19.91■□□□□ 0.78
SS18-226ENST00000585241 POLD1P28340 1107 aa19.91■□□□□ 0.78
SS18-226ENST00000585241 RPS8P62241 208 aaKnown RBP19.91■□□□□ 0.78
SS18-226ENST00000585241 VGLL2Q8N8G2 317 aa19.91■□□□□ 0.78
SS18-226ENST00000585241 RPGRQ92834 1020 aaKnown RBP19.91■□□□□ 0.78
SS18-226ENST00000585241 RBM17Q96I25 401 aaKnown RBP19.91■□□□□ 0.78
SS18-226ENST00000585241 MPHOSPH8Q99549 860 aa19.91■□□□□ 0.78
SS18-226ENST00000585241 ZBTB47Q9UFB7 747 aaPredicted RBP19.91■□□□□ 0.78
SS18-226ENST00000585241 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.91■□□□□ 0.78
SS18-226ENST00000585241 MROH5Q6ZUA9 1318 aa19.91■□□□□ 0.78
SS18-226ENST00000585241 SPEF2Q9C093 1822 aa19.9■□□□□ 0.78
SS18-226ENST00000585241 NPR1P16066 1061 aa19.9■□□□□ 0.78
SS18-226ENST00000585241 TFCP2Q12800 502 aa19.9■□□□□ 0.78
SS18-226ENST00000585241 IL1RAPL2Q9NP60 686 aa19.9■□□□□ 0.78
SS18-226ENST00000585241 CNNM1Q9NRU3 951 aa19.9■□□□□ 0.78
SS18-226ENST00000585241 ATF5Q9Y2D1 282 aaPredicted RBP19.9■□□□□ 0.78
SS18-226ENST00000585241 A0A1B0GUL6 1792 aa19.9■□□□□ 0.78
SS18-226ENST00000585241 ZNF609O15014 1411 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms