RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 CCDC8Q9H0W5 538 aaPredicted RBP15.54■□□□□ 0.08
CDK5RAP3-217ENST00000580287 COL5A3P25940 1745 aaPredicted RBP15.54■□□□□ 0.08
CDK5RAP3-217ENST00000580287 MAP4K4O95819 1239 aaPredicted RBP15.54■□□□□ 0.08
CDK5RAP3-217ENST00000580287 RFC4P35249 363 aa15.54■□□□□ 0.08
CDK5RAP3-217ENST00000580287 TTLL11Q8NHH1 800 aa15.54■□□□□ 0.08
CDK5RAP3-217ENST00000580287 UTP14AQ9BVJ6 771 aaKnown RBP15.54■□□□□ 0.08
CDK5RAP3-217ENST00000580287 NARFQ9UHQ1 456 aa15.54■□□□□ 0.08
CDK5RAP3-217ENST00000580287 MX1P20591 662 aa15.53■□□□□ 0.08
CDK5RAP3-217ENST00000580287 EAF2Q96CJ1 260 aaPredicted RBP15.53■□□□□ 0.08
CDK5RAP3-217ENST00000580287 COPRSQ9NQ92 184 aa15.53■□□□□ 0.08
CDK5RAP3-217ENST00000580287 TLR7Q9NYK1 1049 aaKnown RBP15.53■□□□□ 0.08
CDK5RAP3-217ENST00000580287 TFCP2Q12800 502 aa15.53■□□□□ 0.08
CDK5RAP3-217ENST00000580287 SALL3Q9BXA9 1300 aa15.53■□□□□ 0.08
CDK5RAP3-217ENST00000580287 NTSR2O95665 410 aa15.52■□□□□ 0.08
CDK5RAP3-217ENST00000580287 TTC22Q5TAA0 569 aa15.52■□□□□ 0.08
CDK5RAP3-217ENST00000580287 AACSQ86V21 672 aa15.52■□□□□ 0.08
CDK5RAP3-217ENST00000580287 ZNF652Q9Y2D9 606 aa15.52■□□□□ 0.08
CDK5RAP3-217ENST00000580287 SH3TC1Q8TE82 1336 aa15.52■□□□□ 0.08
CDK5RAP3-217ENST00000580287 NUP98P52948 1817 aa15.52■□□□□ 0.08
CDK5RAP3-217ENST00000580287 ZNF827Q17R98 1081 aa15.52■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CCDC57Q2TAC2 916 aa15.52■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ERFEQ4G0M1 354 aa15.52■□□□□ 0.07
CDK5RAP3-217ENST00000580287 HSP90AB4PQ58FF6 505 aa15.52■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CSF1RP07333 972 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CTSWP56202 376 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 SLC27A3Q5K4L6 730 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 C3orf67Q6ZVT6 689 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CLASRPQ8N2M8 674 aaKnown RBP15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 SDSP20132 328 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ITGA6P23229 1130 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CLEC4GQ6UXB4 293 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ATG9AQ7Z3C6 839 aa15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 DHX37Q8IY37 1157 aaKnown RBP15.51■□□□□ 0.07
CDK5RAP3-217ENST00000580287 EN1Q05925 392 aaPredicted RBP15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ANTXR1Q9H6X2 564 aa15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 SEC31BQ9NQW1 1179 aa15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 RREB1Q92766 1687 aa15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 LY75O60449 1722 aa15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 IFIT5Q13325 482 aaKnown RBP15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 SETDB2Q96T68 719 aa15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 PLA2G12BQ9BX93 195 aa15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CDHR2Q9BYE9 1310 aa15.5■□□□□ 0.07
CDK5RAP3-217ENST00000580287 PLSCR1O15162 318 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 PDE8AO60658 829 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 GTF2E1P29083 439 aaPredicted RBP15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 PARP10Q53GL7 1025 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 TBC1D9Q6ZT07 1266 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 TFCP2L1Q9NZI6 479 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 USP42Q9H9J4 1324 aaKnown RBP15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 C4BP0C0L5 1744 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 IFIT2P09913 472 aaKnown RBP15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 TIMM10P62072 90 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 TAF7LQ5H9L4 462 aa15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CICQ96RK0 1608 aaPredicted RBP15.49■□□□□ 0.07
CDK5RAP3-217ENST00000580287 EZH2Q15910 746 aaKnown RBP15.48■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ERC1Q8IUD2 1116 aa15.48■□□□□ 0.07
CDK5RAP3-217ENST00000580287 RILPL2Q969X0 211 aa15.48■□□□□ 0.07
CDK5RAP3-217ENST00000580287 TRIM6-TRIM34B2RNG4 842 aa15.48■□□□□ 0.07
CDK5RAP3-217ENST00000580287 OSBPL3Q9H4L5 887 aa15.48■□□□□ 0.07
CDK5RAP3-217ENST00000580287 EYA2O00167 538 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 NFIXQ14938 502 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 DEFB132Q7Z7B7 95 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 NBPF5PQ86XG9 351 aaPredicted RBP15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 PI4K2BQ8TCG2 481 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 NDUFB9Q9Y6M9 179 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ZNF831Q5JPB2 1677 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ILDR1Q86SU0 546 aaPredicted RBP15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 STAP2Q9UGK3 403 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 SNAP23O00161 211 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 CDC45O75419 566 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 GYS1P13807 737 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 LDHAL6AQ6ZMR3 332 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 NEUROD6Q96NK8 337 aa15.47■□□□□ 0.07
CDK5RAP3-217ENST00000580287 TNNI3KQ59H18 835 aa15.46■□□□□ 0.07
CDK5RAP3-217ENST00000580287 HELBQ8NG08 1087 aaPredicted RBP15.46■□□□□ 0.07
CDK5RAP3-217ENST00000580287 DBNDD2Q9BQY9 259 aa15.46■□□□□ 0.07
CDK5RAP3-217ENST00000580287 DBNLQ9UJU6 430 aaKnown RBP15.46■□□□□ 0.07
CDK5RAP3-217ENST00000580287 FPGT-TNNI3KV9GXZ4 949 aa15.46■□□□□ 0.07
CDK5RAP3-217ENST00000580287 TAF1LQ8IZX4 1826 aa15.46■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ABCC12Q96J65 1359 aa15.46■□□□□ 0.07
CDK5RAP3-217ENST00000580287 ANKRD18BA2A2Z9 1011 aa15.46■□□□□ 0.06
CDK5RAP3-217ENST00000580287 NPHP1O15259 732 aa15.46■□□□□ 0.06
CDK5RAP3-217ENST00000580287 COL23A1Q86Y22 540 aaPredicted RBP15.45■□□□□ 0.06
CDK5RAP3-217ENST00000580287 HSCBQ8IWL3 235 aa15.45■□□□□ 0.06
CDK5RAP3-217ENST00000580287 FOXD4L1Q9NU39 408 aa15.45■□□□□ 0.06
CDK5RAP3-217ENST00000580287 SRCAPQ6ZRS2 3230 aa15.45■□□□□ 0.06
CDK5RAP3-217ENST00000580287 BOLA2Q9H3K6 86 aa15.45■□□□□ 0.06
CDK5RAP3-217ENST00000580287 IL15P40933 162 aaPredicted RBP15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 AKT1S1Q96B36 256 aa15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 EDC3Q96F86 508 aaKnown RBP15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 CNNM1Q9NRU3 951 aa15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 SSFA2P28290 1259 aa15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 SLC51AQ86UW1 340 aa15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 GZF1Q9H116 711 aaPredicted RBP15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 ECHDC1Q9NTX5 307 aa15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 RIPOR2Q9Y4F9 1068 aa15.44■□□□□ 0.06
CDK5RAP3-217ENST00000580287 ANKRD36CQ5JPF3 1778 aa15.43■□□□□ 0.06
CDK5RAP3-217ENST00000580287 SAMD1Q6SPF0 538 aaPredicted RBP15.43■□□□□ 0.06
CDK5RAP3-217ENST00000580287 WTIPA6NIX2 430 aaPredicted RBP15.43■□□□□ 0.06
CDK5RAP3-217ENST00000580287 CD2BP2O95400 341 aaKnown RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms