RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 MMP10P09238 476 aa20.07■□□□□ 0.8
SS18-211ENST00000578954 TNRC6CQ9HCJ0 1690 aaKnown RBP20.07■□□□□ 0.8
SS18-211ENST00000578954 LRP5O75197 1615 aa20.06■□□□□ 0.8
SS18-211ENST00000578954 GTF2E1P29083 439 aaPredicted RBP20.06■□□□□ 0.8
SS18-211ENST00000578954 PTPN12Q05209 780 aaKnown RBP20.06■□□□□ 0.8
SS18-211ENST00000578954 FAM161AQ3B820 660 aa20.06■□□□□ 0.8
SS18-211ENST00000578954 MSL1Q68DK7 614 aa20.05■□□□□ 0.8
SS18-211ENST00000578954 PARP3Q9Y6F1 533 aa20.05■□□□□ 0.8
SS18-211ENST00000578954 ST5P78524 1137 aa20.04■□□□□ 0.8
SS18-211ENST00000578954 CCDC152Q4G0S7 254 aa20.04■□□□□ 0.8
SS18-211ENST00000578954 HSP90AB4PQ58FF6 505 aa20.04■□□□□ 0.8
SS18-211ENST00000578954 C3orf67Q6ZVT6 689 aa20.04■□□□□ 0.8
SS18-211ENST00000578954 GREM2Q9H772 168 aa20.04■□□□□ 0.8
SS18-211ENST00000578954 FBXO3Q9UK99 471 aa20.04■□□□□ 0.8
SS18-211ENST00000578954 KLRG2A4D1S0 409 aaPredicted RBP20.03■□□□□ 0.8
SS18-211ENST00000578954 RAB11FIP3O75154 756 aa20.03■□□□□ 0.8
SS18-211ENST00000578954 NLRP3Q96P20 1036 aa20.03■□□□□ 0.8
SS18-211ENST00000578954 PA2G4Q9UQ80 394 aaKnown RBP20.03■□□□□ 0.8
SS18-211ENST00000578954 CHMP3Q9Y3E7 222 aa20.03■□□□□ 0.8
SS18-211ENST00000578954 SURF6O75683 361 aaKnown RBP20.02■□□□□ 0.8
SS18-211ENST00000578954 ITGA6P23229 1130 aa20.02■□□□□ 0.8
SS18-211ENST00000578954 NUCB1Q02818 461 aa20.02■□□□□ 0.8
SS18-211ENST00000578954 IFIT5Q13325 482 aaKnown RBP20.02■□□□□ 0.8
SS18-211ENST00000578954 R3HDM1Q15032 1099 aaKnown RBP20.02■□□□□ 0.8
SS18-211ENST00000578954 CCDC57Q2TAC2 916 aa20.02■□□□□ 0.8
SS18-211ENST00000578954 CRY2Q49AN0 593 aa20.02■□□□□ 0.8
SS18-211ENST00000578954 EXOC6BQ9Y2D4 811 aa20.02■□□□□ 0.8
SS18-211ENST00000578954 ANKRD31Q8N7Z5 1873 aa20.02■□□□□ 0.8
SS18-211ENST00000578954 ANKRD18BA2A2Z9 1011 aa20.01■□□□□ 0.79
SS18-211ENST00000578954 NPHP1O15259 732 aa20.01■□□□□ 0.79
SS18-211ENST00000578954 PDZRN3Q9UPQ7 1066 aa20.01■□□□□ 0.79
SS18-211ENST00000578954 CIAO1O76071 339 aa20■□□□□ 0.79
SS18-211ENST00000578954 CCDC24Q8N4L8 307 aa20■□□□□ 0.79
SS18-211ENST00000578954 KLHDC4Q8TBB5 520 aa20■□□□□ 0.79
SS18-211ENST00000578954 BRIP1Q9BX63 1249 aa20■□□□□ 0.79
SS18-211ENST00000578954 MTFR1LQ9H019 292 aa20■□□□□ 0.79
SS18-211ENST00000578954 EYA2O00167 538 aa19.99■□□□□ 0.79
SS18-211ENST00000578954 ERC1Q8IUD2 1116 aa19.99■□□□□ 0.79
SS18-211ENST00000578954 KIF1BPQ96EK5 621 aa19.99■□□□□ 0.79
SS18-211ENST00000578954 CCDC85AQ96PX6 553 aaPredicted RBP19.99■□□□□ 0.79
SS18-211ENST00000578954 G3BP1Q13283 466 aaKnown RBP eCLIP19.98■□□□□ 0.79
SS18-211ENST00000578954 ATG9AQ7Z3C6 839 aa19.98■□□□□ 0.79
SS18-211ENST00000578954 CHD1LQ86WJ1 897 aa19.98■□□□□ 0.79
SS18-211ENST00000578954 C10orf71Q711Q0 1435 aa19.98■□□□□ 0.79
SS18-211ENST00000578954 COL4A1P02462 1669 aa19.97■□□□□ 0.79
SS18-211ENST00000578954 ANKRD45Q5TZF3 282 aa19.97■□□□□ 0.79
SS18-211ENST00000578954 RHPN1Q8TCX5 695 aa19.97■□□□□ 0.79
SS18-211ENST00000578954 ZNF594Q96JF6 807 aaPredicted RBP19.97■□□□□ 0.79
SS18-211ENST00000578954 CDC5LQ99459 802 aaKnown RBP19.97■□□□□ 0.79
SS18-211ENST00000578954 LRRCC1Q9C099 1032 aa19.97■□□□□ 0.79
SS18-211ENST00000578954 SEC31BQ9NQW1 1179 aa19.97■□□□□ 0.79
SS18-211ENST00000578954 SASH1O94885 1247 aa19.96■□□□□ 0.79
SS18-211ENST00000578954 HOXA10P31260 410 aaPredicted RBP19.96■□□□□ 0.79
SS18-211ENST00000578954 IL15P40933 162 aaPredicted RBP19.96■□□□□ 0.79
SS18-211ENST00000578954 SIL1Q9H173 461 aa19.96■□□□□ 0.79
SS18-211ENST00000578954 ZBTB7AO95365 584 aa19.95■□□□□ 0.78
SS18-211ENST00000578954 TAF7LQ5H9L4 462 aa19.95■□□□□ 0.78
SS18-211ENST00000578954 SGIP1Q9BQI5 828 aa19.95■□□□□ 0.78
SS18-211ENST00000578954 RIPOR2Q9Y4F9 1068 aa19.95■□□□□ 0.78
SS18-211ENST00000578954 KIF13BQ9NQT8 1826 aa19.95■□□□□ 0.78
SS18-211ENST00000578954 COL11A2P13942 1736 aaPredicted RBP19.94■□□□□ 0.78
SS18-211ENST00000578954 PSDA5PKW4 1024 aaPredicted RBP19.94■□□□□ 0.78
SS18-211ENST00000578954 PDE6BP35913 854 aa19.94■□□□□ 0.78
SS18-211ENST00000578954 OS9Q13438 667 aaPredicted RBP19.94■□□□□ 0.78
SS18-211ENST00000578954 LRRC24Q50LG9 513 aa19.94■□□□□ 0.78
SS18-211ENST00000578954 PUS3Q9BZE2 481 aaKnown RBP19.94■□□□□ 0.78
SS18-211ENST00000578954 LNPKQ9C0E8 428 aa19.94■□□□□ 0.78
SS18-211ENST00000578954 PDE4AP27815 886 aa19.93■□□□□ 0.78
SS18-211ENST00000578954 IGHMBP2P38935 993 aaKnown RBP19.93■□□□□ 0.78
SS18-211ENST00000578954 GRAPQ13588 217 aa19.93■□□□□ 0.78
SS18-211ENST00000578954 LDHAL6AQ6ZMR3 332 aa19.93■□□□□ 0.78
SS18-211ENST00000578954 DDX46Q7L014 1031 aaKnown RBP19.93■□□□□ 0.78
SS18-211ENST00000578954 ANKRD18AQ8IVF6 992 aa19.93■□□□□ 0.78
SS18-211ENST00000578954 GRAPLQ8TC17 118 aaPredicted RBP19.93■□□□□ 0.78
SS18-211ENST00000578954 CRAMP1Q96RY5 1269 aa19.93■□□□□ 0.78
SS18-211ENST00000578954 GPR108Q9NPR9 543 aa19.93■□□□□ 0.78
SS18-211ENST00000578954 SMARCA5O60264 1052 aaPredicted RBP19.92■□□□□ 0.78
SS18-211ENST00000578954 SRGNP10124 158 aa19.92■□□□□ 0.78
SS18-211ENST00000578954 CELF1Q92879 486 aaKnown RBP19.92■□□□□ 0.78
SS18-211ENST00000578954 BSDC1Q9NW68 430 aaPredicted RBP19.92■□□□□ 0.78
SS18-211ENST00000578954 SALL3Q9BXA9 1300 aa19.92■□□□□ 0.78
SS18-211ENST00000578954 TAF1P21675 1872 aa19.91■□□□□ 0.78
SS18-211ENST00000578954 APBB1O00213 710 aa19.91■□□□□ 0.78
SS18-211ENST00000578954 POLD1P28340 1107 aa19.91■□□□□ 0.78
SS18-211ENST00000578954 RPS8P62241 208 aaKnown RBP19.91■□□□□ 0.78
SS18-211ENST00000578954 VGLL2Q8N8G2 317 aa19.91■□□□□ 0.78
SS18-211ENST00000578954 RPGRQ92834 1020 aaKnown RBP19.91■□□□□ 0.78
SS18-211ENST00000578954 RBM17Q96I25 401 aaKnown RBP19.91■□□□□ 0.78
SS18-211ENST00000578954 MPHOSPH8Q99549 860 aa19.91■□□□□ 0.78
SS18-211ENST00000578954 ZBTB47Q9UFB7 747 aaPredicted RBP19.91■□□□□ 0.78
SS18-211ENST00000578954 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.91■□□□□ 0.78
SS18-211ENST00000578954 MROH5Q6ZUA9 1318 aa19.91■□□□□ 0.78
SS18-211ENST00000578954 SPEF2Q9C093 1822 aa19.9■□□□□ 0.78
SS18-211ENST00000578954 NPR1P16066 1061 aa19.9■□□□□ 0.78
SS18-211ENST00000578954 TFCP2Q12800 502 aa19.9■□□□□ 0.78
SS18-211ENST00000578954 IL1RAPL2Q9NP60 686 aa19.9■□□□□ 0.78
SS18-211ENST00000578954 CNNM1Q9NRU3 951 aa19.9■□□□□ 0.78
SS18-211ENST00000578954 ATF5Q9Y2D1 282 aaPredicted RBP19.9■□□□□ 0.78
SS18-211ENST00000578954 A0A1B0GUL6 1792 aa19.9■□□□□ 0.78
SS18-211ENST00000578954 ZNF609O15014 1411 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms