RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 JDP2Q8WYK2 163 aa19.4■□□□□ 0.7
SMG6-220ENST00000576218 CCDC85AQ96PX6 553 aaPredicted RBP19.4■□□□□ 0.7
SMG6-220ENST00000576218 PSMD1Q99460 953 aa19.4■□□□□ 0.7
SMG6-220ENST00000576218 NMRK2Q9NPI5 230 aa19.4■□□□□ 0.7
SMG6-220ENST00000576218 F6X3S4 739 aa19.39■□□□□ 0.69
SMG6-220ENST00000576218 C1QTNF8P60827 252 aa19.39■□□□□ 0.69
SMG6-220ENST00000576218 HNRNPUQ00839 825 aaKnown RBP eCLIP19.39■□□□□ 0.69
SMG6-220ENST00000576218 SLC4A10Q6U841 1118 aa19.39■□□□□ 0.69
SMG6-220ENST00000576218 DPP8Q6V1X1 898 aaPredicted RBP19.39■□□□□ 0.69
SMG6-220ENST00000576218 UBE3BQ7Z3V4 1068 aa19.39■□□□□ 0.69
SMG6-220ENST00000576218 SUPT20HQ8NEM7 779 aa19.39■□□□□ 0.69
SMG6-220ENST00000576218 LINS1Q8NG48 757 aa19.39■□□□□ 0.69
SMG6-220ENST00000576218 GLTPD2A6NH11 291 aa19.38■□□□□ 0.69
SMG6-220ENST00000576218 SP8Q8IXZ3 490 aa19.38■□□□□ 0.69
SMG6-220ENST00000576218 LARGE2Q8N3Y3 721 aa19.38■□□□□ 0.69
SMG6-220ENST00000576218 CDHR2Q9BYE9 1310 aa19.38■□□□□ 0.69
SMG6-220ENST00000576218 GCKRQ14397 625 aa19.37■□□□□ 0.69
SMG6-220ENST00000576218 MPNDQ8N594 471 aa19.37■□□□□ 0.69
SMG6-220ENST00000576218 BCL2L13Q9BXK5 485 aa19.37■□□□□ 0.69
SMG6-220ENST00000576218 RRAGCQ9HB90 399 aa19.37■□□□□ 0.69
SMG6-220ENST00000576218 PPIP5K2O43314 1243 aa19.36■□□□□ 0.69
SMG6-220ENST00000576218 CTSWP56202 376 aa19.36■□□□□ 0.69
SMG6-220ENST00000576218 CELF1Q92879 486 aaKnown RBP19.36■□□□□ 0.69
SMG6-220ENST00000576218 SMC4Q9NTJ3 1288 aa19.36■□□□□ 0.69
SMG6-220ENST00000576218 DICER1Q9UPY3 1922 aaKnown RBP19.35■□□□□ 0.69
SMG6-220ENST00000576218 KIF3CO14782 793 aa19.35■□□□□ 0.69
SMG6-220ENST00000576218 SLC51AQ86UW1 340 aa19.35■□□□□ 0.69
SMG6-220ENST00000576218 NIM1KQ8IY84 436 aa19.35■□□□□ 0.69
SMG6-220ENST00000576218 EIF6P56537 245 aaKnown RBP19.34■□□□□ 0.69
SMG6-220ENST00000576218 RPS8P62241 208 aaKnown RBP19.34■□□□□ 0.69
SMG6-220ENST00000576218 ANKRD18AQ8IVF6 992 aa19.34■□□□□ 0.69
SMG6-220ENST00000576218 CDC5LQ99459 802 aaKnown RBP19.34■□□□□ 0.69
SMG6-220ENST00000576218 SEC31BQ9NQW1 1179 aa19.34■□□□□ 0.69
SMG6-220ENST00000576218 C9orf78Q9NZ63 289 aaPredicted RBP19.34■□□□□ 0.69
SMG6-220ENST00000576218 PTPRCP08575 1304 aa19.33■□□□□ 0.69
SMG6-220ENST00000576218 CT47B1P0C2W7 299 aaPredicted RBP19.33■□□□□ 0.68
SMG6-220ENST00000576218 AOC3Q16853 763 aa19.33■□□□□ 0.68
SMG6-220ENST00000576218 MRPL50Q8N5N7 158 aaKnown RBP19.33■□□□□ 0.68
SMG6-220ENST00000576218 SSH1Q8WYL5 1049 aa19.33■□□□□ 0.68
SMG6-220ENST00000576218 SRCIN1Q9C0H9 1055 aa19.33■□□□□ 0.68
SMG6-220ENST00000576218 NSFL1CQ9UNZ2 370 aaKnown RBP19.33■□□□□ 0.68
SMG6-220ENST00000576218 H7C1W4 665 aa19.32■□□□□ 0.68
SMG6-220ENST00000576218 TOMM70O94826 608 aa19.32■□□□□ 0.68
SMG6-220ENST00000576218 DDNO94850 711 aaPredicted RBP19.32■□□□□ 0.68
SMG6-220ENST00000576218 VEGFAP15692 232 aaPredicted RBP19.32■□□□□ 0.68
SMG6-220ENST00000576218 ALDH1L2Q3SY69 923 aa19.32■□□□□ 0.68
SMG6-220ENST00000576218 BEND3Q5T5X7 828 aa19.32■□□□□ 0.68
SMG6-220ENST00000576218 ANKIB1Q9P2G1 1089 aa19.32■□□□□ 0.68
SMG6-220ENST00000576218 CHMP3Q9Y3E7 222 aa19.32■□□□□ 0.68
SMG6-220ENST00000576218 TAF1P21675 1872 aa19.31■□□□□ 0.68
SMG6-220ENST00000576218 C6orf229H3BNL8 230 aa19.31■□□□□ 0.68
SMG6-220ENST00000576218 GJA3Q9Y6H8 435 aa19.31■□□□□ 0.68
SMG6-220ENST00000576218 SNED1Q8TER0 1413 aa19.31■□□□□ 0.68
SMG6-220ENST00000576218 ZNF541Q9H0D2 1346 aa19.3■□□□□ 0.68
SMG6-220ENST00000576218 ALDH1L1O75891 902 aa19.3■□□□□ 0.68
SMG6-220ENST00000576218 TTLL11Q8NHH1 800 aa19.3■□□□□ 0.68
SMG6-220ENST00000576218 VPS33BQ9H267 617 aa19.3■□□□□ 0.68
SMG6-220ENST00000576218 GREM2Q9H772 168 aa19.3■□□□□ 0.68
SMG6-220ENST00000576218 IQCA1LA6NCM1 817 aa19.29■□□□□ 0.68
SMG6-220ENST00000576218 IGHMBP2P38935 993 aaKnown RBP19.29■□□□□ 0.68
SMG6-220ENST00000576218 TRMT2AQ8IZ69 625 aaKnown RBP19.29■□□□□ 0.68
SMG6-220ENST00000576218 EYA3Q99504 573 aa19.29■□□□□ 0.68
SMG6-220ENST00000576218 RTFDC1Q9BY42 306 aaPredicted RBP19.29■□□□□ 0.68
SMG6-220ENST00000576218 MYH3P11055 1940 aa19.28■□□□□ 0.68
SMG6-220ENST00000576218 G3V3G9 751 aa19.28■□□□□ 0.68
SMG6-220ENST00000576218 GRM8O00222 908 aa19.28■□□□□ 0.68
SMG6-220ENST00000576218 GPSM2P81274 684 aa19.28■□□□□ 0.68
SMG6-220ENST00000576218 DCAF8Q5TAQ9 597 aa19.28■□□□□ 0.68
SMG6-220ENST00000576218 FZD9O00144 591 aa19.27■□□□□ 0.68
SMG6-220ENST00000576218 WASHC4Q2M389 1173 aa19.27■□□□□ 0.68
SMG6-220ENST00000576218 FAM161AQ3B820 660 aa19.27■□□□□ 0.68
SMG6-220ENST00000576218 RBM46Q8TBY0 533 aaKnown RBP19.27■□□□□ 0.68
SMG6-220ENST00000576218 MPHOSPH8Q99549 860 aa19.27■□□□□ 0.68
SMG6-220ENST00000576218 PLA2G12BQ9BX93 195 aa19.27■□□□□ 0.68
SMG6-220ENST00000576218 LRRC37AA6NMS7 1700 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 RIMBP2O15034 1052 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 UFL1O94874 794 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 ITGA6P23229 1130 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 LMOD1P29536 600 aaPredicted RBP19.26■□□□□ 0.67
SMG6-220ENST00000576218 KIAA2012Q0VF49 1180 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 TAF7LQ5H9L4 462 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 GPC2Q8N158 579 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 GGA1Q9UJY5 639 aa19.26■□□□□ 0.67
SMG6-220ENST00000576218 WDR90Q96KV7 1748 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 RTL9Q8NET4 1388 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 ANKRD18BA2A2Z9 1011 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 CASP7P55210 303 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 SMC1BQ8NDV3 1235 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 ZNRF3Q9ULT6 936 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 XDHP47989 1333 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 KIF16BQ96L93 1317 aa19.25■□□□□ 0.67
SMG6-220ENST00000576218 IFIT5Q13325 482 aaKnown RBP19.24■□□□□ 0.67
SMG6-220ENST00000576218 API5Q9BZZ5 524 aaKnown RBP19.24■□□□□ 0.67
SMG6-220ENST00000576218 ZC3H12CQ9C0D7 883 aaKnown RBP19.24■□□□□ 0.67
SMG6-220ENST00000576218 HACL1Q9UJ83 578 aa19.24■□□□□ 0.67
SMG6-220ENST00000576218 NOB1Q9ULX3 412 aaKnown RBP19.24■□□□□ 0.67
SMG6-220ENST00000576218 COL4A1P02462 1669 aa19.24■□□□□ 0.67
SMG6-220ENST00000576218 CCDC57Q2TAC2 916 aa19.23■□□□□ 0.67
SMG6-220ENST00000576218 EAPPQ56P03 285 aaPredicted RBP19.23■□□□□ 0.67
SMG6-220ENST00000576218 TBC1D16Q8TBP0 767 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms