RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZBTB40Q9NUA8 1239 aa11.74□□□□□ -0.53
VPS35-211ENST00000569950 DPEP1P16444 411 aa11.73□□□□□ -0.53
VPS35-211ENST00000569950 HOXA10P31260 410 aaPredicted RBP11.73□□□□□ -0.53
VPS35-211ENST00000569950 RTL9Q8NET4 1388 aa11.73□□□□□ -0.53
VPS35-211ENST00000569950 SYT17Q9BSW7 474 aa11.73□□□□□ -0.53
VPS35-211ENST00000569950 A0A0G2JLW4 131 aa11.72□□□□□ -0.53
VPS35-211ENST00000569950 PDE8AO60658 829 aa11.72□□□□□ -0.53
VPS35-211ENST00000569950 RFX5P48382 616 aaPredicted RBP11.72□□□□□ -0.53
VPS35-211ENST00000569950 CTSWP56202 376 aa11.72□□□□□ -0.53
VPS35-211ENST00000569950 ST5P78524 1137 aa11.72□□□□□ -0.53
VPS35-211ENST00000569950 ITPRIPQ8IWB1 547 aa11.72□□□□□ -0.53
VPS35-211ENST00000569950 FTSJ3Q8IY81 847 aaKnown RBP11.72□□□□□ -0.53
VPS35-211ENST00000569950 CRBNQ96SW2 442 aa11.72□□□□□ -0.53
VPS35-211ENST00000569950 BICC1Q9H694 974 aaKnown RBP11.72□□□□□ -0.53
VPS35-211ENST00000569950 C9orf78Q9NZ63 289 aaPredicted RBP11.72□□□□□ -0.53
VPS35-211ENST00000569950 LRRFIP2Q9Y608 721 aaKnown RBP11.72□□□□□ -0.53
VPS35-211ENST00000569950 FER1L6Q2WGJ9 1857 aa11.72□□□□□ -0.53
VPS35-211ENST00000569950 DUOX1Q9NRD9 1551 aa11.71□□□□□ -0.53
VPS35-211ENST00000569950 MTX1Q13505 466 aa11.71□□□□□ -0.53
VPS35-211ENST00000569950 SIRT2Q8IXJ6 389 aa11.71□□□□□ -0.53
VPS35-211ENST00000569950 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.71□□□□□ -0.53
VPS35-211ENST00000569950 GREM2Q9H772 168 aa11.71□□□□□ -0.53
VPS35-211ENST00000569950 C1orf115Q9H7X2 142 aa11.71□□□□□ -0.53
VPS35-211ENST00000569950 SEC31BQ9NQW1 1179 aa11.71□□□□□ -0.53
VPS35-211ENST00000569950 MS4A1P11836 297 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 PDE6BP35913 854 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 TGFB2P61812 414 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 FAM161AQ3B820 660 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 LMBR1LQ6UX01 489 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 C2CD5Q86YS7 1000 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 C7orf43Q8WVR3 580 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 DDX19BQ9UMR2 479 aa11.7□□□□□ -0.54
VPS35-211ENST00000569950 GNAI3P08754 354 aa11.69□□□□□ -0.54
VPS35-211ENST00000569950 UBTFL1P0CB47 393 aaPredicted RBP11.69□□□□□ -0.54
VPS35-211ENST00000569950 IRX6P78412 446 aaPredicted RBP11.69□□□□□ -0.54
VPS35-211ENST00000569950 STYK1Q6J9G0 422 aa11.69□□□□□ -0.54
VPS35-211ENST00000569950 EXOC6Q8TAG9 804 aa11.69□□□□□ -0.54
VPS35-211ENST00000569950 CELF1Q92879 486 aaKnown RBP11.69□□□□□ -0.54
VPS35-211ENST00000569950 NLRP3Q96P20 1036 aa11.69□□□□□ -0.54
VPS35-211ENST00000569950 CCDC85AQ96PX6 553 aaPredicted RBP11.69□□□□□ -0.54
VPS35-211ENST00000569950 CRAMP1Q96RY5 1269 aa11.69□□□□□ -0.54
VPS35-211ENST00000569950 SBF1O95248 1867 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 PNMA6EA0A0J9YXQ4 647 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 DCAF8L1A6NGE4 600 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 NPR1P16066 1061 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 GTF2E1P29083 439 aaPredicted RBP11.68□□□□□ -0.54
VPS35-211ENST00000569950 CEP85Q6P2H3 762 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 OLFM4Q6UX06 510 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 MASTLQ96GX5 879 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 RNF216Q9NWF9 866 aaPredicted RBP11.68□□□□□ -0.54
VPS35-211ENST00000569950 PCDHB15Q9Y5E8 787 aa11.68□□□□□ -0.54
VPS35-211ENST00000569950 H0YIN7 160 aa11.67□□□□□ -0.54
VPS35-211ENST00000569950 GNAI2P04899 355 aa11.67□□□□□ -0.54
VPS35-211ENST00000569950 POLA2Q14181 598 aa11.67□□□□□ -0.54
VPS35-211ENST00000569950 PPP1R1BQ9UD71 204 aaPredicted RBP11.67□□□□□ -0.54
VPS35-211ENST00000569950 PDZRN3Q9UPQ7 1066 aa11.67□□□□□ -0.54
VPS35-211ENST00000569950 CCDC88AQ3V6T2 1871 aa11.66□□□□□ -0.54
VPS35-211ENST00000569950 ZNF646O15015 1829 aaPredicted RBP11.66□□□□□ -0.54
VPS35-211ENST00000569950 CENPBP07199 599 aaPredicted RBP11.66□□□□□ -0.54
VPS35-211ENST00000569950 YBX3P16989 372 aaKnown RBP eCLIP11.66□□□□□ -0.541e-6■■□□□ 13.6
VPS35-211ENST00000569950 ITGA6P23229 1130 aa11.66□□□□□ -0.54
VPS35-211ENST00000569950 PTPN12Q05209 780 aaKnown RBP11.66□□□□□ -0.54
VPS35-211ENST00000569950 PRPF40BQ6NWY9 871 aaKnown RBP11.66□□□□□ -0.54
VPS35-211ENST00000569950 KLHL34Q8N239 644 aa11.66□□□□□ -0.54
VPS35-211ENST00000569950 KLHDC4Q8TBB5 520 aa11.66□□□□□ -0.54
VPS35-211ENST00000569950 SSH3Q8TE77 659 aa11.66□□□□□ -0.54
VPS35-211ENST00000569950 ZNF594Q96JF6 807 aaPredicted RBP11.66□□□□□ -0.54
VPS35-211ENST00000569950 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.66□□□□□ -0.54
VPS35-211ENST00000569950 COL4A5P29400 1685 aa11.65□□□□□ -0.54
VPS35-211ENST00000569950 WTIPA6NIX2 430 aaPredicted RBP11.65□□□□□ -0.54
VPS35-211ENST00000569950 NPHP1O15259 732 aa11.65□□□□□ -0.54
VPS35-211ENST00000569950 ATP8B2P98198 1209 aa11.65□□□□□ -0.54
VPS35-211ENST00000569950 GRAPQ13588 217 aa11.65□□□□□ -0.54
VPS35-211ENST00000569950 CCDC152Q4G0S7 254 aa11.65□□□□□ -0.54
VPS35-211ENST00000569950 GRAPLQ8TC17 118 aaPredicted RBP11.65□□□□□ -0.54
VPS35-211ENST00000569950 PUS3Q9BZE2 481 aaKnown RBP11.65□□□□□ -0.54
VPS35-211ENST00000569950 WWC3Q9ULE0 1092 aa11.65□□□□□ -0.54
VPS35-211ENST00000569950 ARAP2Q8WZ64 1704 aa11.64□□□□□ -0.55
VPS35-211ENST00000569950 PRELPP51888 382 aa11.64□□□□□ -0.55
VPS35-211ENST00000569950 ATG9AQ7Z3C6 839 aa11.64□□□□□ -0.55
VPS35-211ENST00000569950 RPGRQ92834 1020 aaKnown RBP11.64□□□□□ -0.55
VPS35-211ENST00000569950 COPRSQ9NQ92 184 aa11.64□□□□□ -0.55
VPS35-211ENST00000569950 PIM2Q9P1W9 311 aa11.64□□□□□ -0.55
VPS35-211ENST00000569950 PA2G4Q9UQ80 394 aaKnown RBP11.64□□□□□ -0.55
VPS35-211ENST00000569950 CHD4Q14839 1912 aa11.64□□□□□ -0.55
VPS35-211ENST00000569950 DICER1Q9UPY3 1922 aaKnown RBP11.64□□□□□ -0.55
VPS35-211ENST00000569950 IRS2Q9Y4H2 1338 aa11.63□□□□□ -0.55
VPS35-211ENST00000569950 HSP90B1P14625 803 aaKnown RBP11.63□□□□□ -0.55
VPS35-211ENST00000569950 RPS8P62241 208 aaKnown RBP11.63□□□□□ -0.55
VPS35-211ENST00000569950 LRRC24Q50LG9 513 aa11.63□□□□□ -0.55
VPS35-211ENST00000569950 DDX46Q7L014 1031 aaKnown RBP11.63□□□□□ -0.55
VPS35-211ENST00000569950 TTLL6Q8N841 843 aa11.63□□□□□ -0.55
VPS35-211ENST00000569950 CNKSR1Q969H4 720 aa11.63□□□□□ -0.55
VPS35-211ENST00000569950 ZNF622Q969S3 477 aaKnown RBP eCLIP11.63□□□□□ -0.55
VPS35-211ENST00000569950 RBM17Q96I25 401 aaKnown RBP11.63□□□□□ -0.55
VPS35-211ENST00000569950 ATP6V0A2Q9Y487 856 aa11.63□□□□□ -0.55
VPS35-211ENST00000569950 RIPOR2Q9Y4F9 1068 aa11.63□□□□□ -0.55
VPS35-211ENST00000569950 PPEF1O14829 653 aaPredicted RBP11.62□□□□□ -0.55
VPS35-211ENST00000569950 SRGAP3O43295 1099 aa11.62□□□□□ -0.55
VPS35-211ENST00000569950 ALDH1B1P30837 517 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms