RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 SURF6O75683 361 aaKnown RBP15.88■□□□□ 0.13
CLK3-214ENST00000564096 SERPINB2P05120 415 aa15.88■□□□□ 0.13
CLK3-214ENST00000564096 MMP10P09238 476 aa15.88■□□□□ 0.13
CLK3-214ENST00000564096 HCLS1P14317 486 aaPredicted RBP15.88■□□□□ 0.13
CLK3-214ENST00000564096 TM4SF1P30408 202 aa15.88■□□□□ 0.13
CLK3-214ENST00000564096 FAM161AQ3B820 660 aa15.88■□□□□ 0.13
CLK3-214ENST00000564096 PELP1Q8IZL8 1130 aaKnown RBP15.88■□□□□ 0.13
CLK3-214ENST00000564096 DDX60Q8IY21 1712 aaKnown RBP15.88■□□□□ 0.13
CLK3-214ENST00000564096 ANKRD18BA2A2Z9 1011 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 CSF1RP07333 972 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 DDR1Q08345 913 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 SLC10A5Q5PT55 438 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 MSL1Q68DK7 614 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 PRR5LQ6MZQ0 368 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 TTLL11Q8NHH1 800 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 NLRP3Q96P20 1036 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 COPRSQ9NQ92 184 aa15.87■□□□□ 0.13
CLK3-214ENST00000564096 LRP5O75197 1615 aa15.86■□□□□ 0.13
CLK3-214ENST00000564096 MYH3P11055 1940 aa15.86■□□□□ 0.13
CLK3-214ENST00000564096 G3BP1Q13283 466 aaKnown RBP eCLIP15.86■□□□□ 0.13
CLK3-214ENST00000564096 SYNE4Q8N205 404 aa15.86■□□□□ 0.13
CLK3-214ENST00000564096 CDC5LQ99459 802 aaKnown RBP15.86■□□□□ 0.13
CLK3-214ENST00000564096 FBXO3Q9UK99 471 aa15.86■□□□□ 0.13
CLK3-214ENST00000564096 EXOC6BQ9Y2D4 811 aa15.86■□□□□ 0.13
CLK3-214ENST00000564096 NOP58Q9Y2X3 529 aaKnown RBP15.86■□□□□ 0.13
CLK3-214ENST00000564096 ITGA6P23229 1130 aa15.85■□□□□ 0.13
CLK3-214ENST00000564096 NUCB1Q02818 461 aa15.85■□□□□ 0.13
CLK3-214ENST00000564096 KIF1BPQ96EK5 621 aa15.85■□□□□ 0.13
CLK3-214ENST00000564096 LRRCC1Q9C099 1032 aa15.85■□□□□ 0.13
CLK3-214ENST00000564096 GREM2Q9H772 168 aa15.85■□□□□ 0.13
CLK3-214ENST00000564096 NRXN2Q9P2S2 1712 aa15.85■□□□□ 0.13
CLK3-214ENST00000564096 RFX5P48382 616 aaPredicted RBP15.84■□□□□ 0.13
CLK3-214ENST00000564096 SF3B3Q15393 1217 aaKnown RBP15.84■□□□□ 0.13
CLK3-214ENST00000564096 ANKRD45Q5TZF3 282 aa15.84■□□□□ 0.13
CLK3-214ENST00000564096 CHD1LQ86WJ1 897 aa15.84■□□□□ 0.13
CLK3-214ENST00000564096 CCDC85AQ96PX6 553 aaPredicted RBP15.84■□□□□ 0.13
CLK3-214ENST00000564096 TNRC6CQ9HCJ0 1690 aaKnown RBP15.83■□□□□ 0.13
CLK3-214ENST00000564096 CASZ1Q86V15 1759 aa15.83■□□□□ 0.12
CLK3-214ENST00000564096 APBB1O00213 710 aa15.83■□□□□ 0.12
CLK3-214ENST00000564096 CIAO1O76071 339 aa15.83■□□□□ 0.12
CLK3-214ENST00000564096 IGHMBP2P38935 993 aaKnown RBP15.83■□□□□ 0.12
CLK3-214ENST00000564096 PTPN12Q05209 780 aaKnown RBP15.83■□□□□ 0.12
CLK3-214ENST00000564096 MTFR1LQ9H019 292 aa15.83■□□□□ 0.12
CLK3-214ENST00000564096 SIL1Q9H173 461 aa15.83■□□□□ 0.12
CLK3-214ENST00000564096 PDZRN3Q9UPQ7 1066 aa15.83■□□□□ 0.12
CLK3-214ENST00000564096 PA2G4Q9UQ80 394 aaKnown RBP15.83■□□□□ 0.12
CLK3-214ENST00000564096 POLD1P28340 1107 aa15.82■□□□□ 0.12
CLK3-214ENST00000564096 IL15P40933 162 aaPredicted RBP15.82■□□□□ 0.12
CLK3-214ENST00000564096 R3HDM1Q15032 1099 aaKnown RBP15.82■□□□□ 0.12
CLK3-214ENST00000564096 RPGRQ92834 1020 aaKnown RBP15.82■□□□□ 0.12
CLK3-214ENST00000564096 EYA2O00167 538 aa15.81■□□□□ 0.12
CLK3-214ENST00000564096 PDE6BP35913 854 aa15.81■□□□□ 0.12
CLK3-214ENST00000564096 DDX46Q7L014 1031 aaKnown RBP15.81■□□□□ 0.12
CLK3-214ENST00000564096 KLHDC4Q8TBB5 520 aa15.81■□□□□ 0.12
CLK3-214ENST00000564096 RHPN1Q8TCX5 695 aa15.81■□□□□ 0.12
CLK3-214ENST00000564096 MPHOSPH8Q99549 860 aa15.81■□□□□ 0.12
CLK3-214ENST00000564096 BRIP1Q9BX63 1249 aa15.81■□□□□ 0.12
CLK3-214ENST00000564096 LNPKQ9C0E8 428 aa15.81■□□□□ 0.12
CLK3-214ENST00000564096 ANKRD18AQ8IVF6 992 aa15.8■□□□□ 0.12
CLK3-214ENST00000564096 CLASRPQ8N2M8 674 aaKnown RBP15.8■□□□□ 0.12
CLK3-214ENST00000564096 CNNM1Q9NRU3 951 aa15.8■□□□□ 0.12
CLK3-214ENST00000564096 C10orf71Q711Q0 1435 aa15.79■□□□□ 0.12
CLK3-214ENST00000564096 CRY2Q49AN0 593 aa15.79■□□□□ 0.12
CLK3-214ENST00000564096 LDHAL6AQ6ZMR3 332 aa15.79■□□□□ 0.12
CLK3-214ENST00000564096 C3orf67Q6ZVT6 689 aa15.79■□□□□ 0.12
CLK3-214ENST00000564096 CCDC24Q8N4L8 307 aa15.79■□□□□ 0.12
CLK3-214ENST00000564096 RBM17Q96I25 401 aaKnown RBP15.79■□□□□ 0.12
CLK3-214ENST00000564096 MROH5Q6ZUA9 1318 aa15.78■□□□□ 0.12
CLK3-214ENST00000564096 GPATCH3Q96I76 525 aa15.78■□□□□ 0.12
CLK3-214ENST00000564096 ZNF594Q96JF6 807 aaPredicted RBP15.78■□□□□ 0.12
CLK3-214ENST00000564096 ZBTB7AO95365 584 aa15.77■□□□□ 0.12
CLK3-214ENST00000564096 RGS3P49796 1198 aa15.77■□□□□ 0.12
CLK3-214ENST00000564096 GRAPQ13588 217 aa15.77■□□□□ 0.12
CLK3-214ENST00000564096 METTL24Q5JXM2 366 aa15.77■□□□□ 0.12
CLK3-214ENST00000564096 GRAPLQ8TC17 118 aaPredicted RBP15.77■□□□□ 0.12
CLK3-214ENST00000564096 PDGFDQ9GZP0 370 aaPredicted RBP15.77■□□□□ 0.12
CLK3-214ENST00000564096 SEC31BQ9NQW1 1179 aa15.77■□□□□ 0.12
CLK3-214ENST00000564096 CEP126Q9P2H0 1117 aa15.77■□□□□ 0.12
CLK3-214ENST00000564096 ZNF609O15014 1411 aa15.77■□□□□ 0.11
CLK3-214ENST00000564096 KLRG2A4D1S0 409 aaPredicted RBP15.76■□□□□ 0.11
CLK3-214ENST00000564096 SMARCA5O60264 1052 aaPredicted RBP15.76■□□□□ 0.11
CLK3-214ENST00000564096 IFIT2P09913 472 aaKnown RBP15.76■□□□□ 0.11
CLK3-214ENST00000564096 TMC4Q7Z404 712 aa15.76■□□□□ 0.11
CLK3-214ENST00000564096 IL1RAPL2Q9NP60 686 aa15.76■□□□□ 0.11
CLK3-214ENST00000564096 AKAP2Q9Y2D5 859 aa15.76■□□□□ 0.11
CLK3-214ENST00000564096 PSDA5PKW4 1024 aaPredicted RBP15.75■□□□□ 0.11
CLK3-214ENST00000564096 NPR1P16066 1061 aa15.75■□□□□ 0.11
CLK3-214ENST00000564096 LRRC24Q50LG9 513 aa15.75■□□□□ 0.11
CLK3-214ENST00000564096 ATG9AQ7Z3C6 839 aa15.75■□□□□ 0.11
CLK3-214ENST00000564096 AACSQ86V21 672 aa15.75■□□□□ 0.11
CLK3-214ENST00000564096 BCL11AQ9H165 835 aa15.75■□□□□ 0.11
CLK3-214ENST00000564096 GPR108Q9NPR9 543 aa15.75■□□□□ 0.11
CLK3-214ENST00000564096 BSDC1Q9NW68 430 aaPredicted RBP15.75■□□□□ 0.11
CLK3-214ENST00000564096 AOX1Q06278 1338 aa15.74■□□□□ 0.11
CLK3-214ENST00000564096 SASH1O94885 1247 aa15.74■□□□□ 0.11
CLK3-214ENST00000564096 MX1P20591 662 aa15.74■□□□□ 0.11
CLK3-214ENST00000564096 HOXA10P31260 410 aaPredicted RBP15.74■□□□□ 0.11
CLK3-214ENST00000564096 RPS8P62241 208 aaKnown RBP15.74■□□□□ 0.11
CLK3-214ENST00000564096 TFCP2Q12800 502 aa15.74■□□□□ 0.11
CLK3-214ENST00000564096 TNNI3KQ59H18 835 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms