RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NLRP2Q9NX02 1062 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 NUDCQ9Y266 331 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 NRXN3Q9Y4C0 1643 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 TTC21AQ8NDW8 1320 aa6.71□□□□□ -1.34
LDLR-209ENST00000558528 INSRP06213 1382 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 TNS1Q9HBL0 1735 aaKnown RBP6.7□□□□□ -1.34
LDLR-209ENST00000558528 PPIP5K1Q6PFW1 1433 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 NSD3Q9BZ95 1437 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 NDUFB5O43674 189 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 PPP2R1AP30153 589 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 PSME1Q06323 249 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 WDR43Q15061 677 aaKnown RBP eCLIP6.7□□□□□ -1.34
LDLR-209ENST00000558528 SAMD7Q7Z3H4 446 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 UNC5CLQ8IV45 518 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 NGEFQ8N5V2 710 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 SLC43A3Q8NBI5 491 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 PIK3R5Q8WYR1 880 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 COG3Q96JB2 828 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 PRIMPOLQ96LW4 560 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 ARHGAP9Q9BRR9 750 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 SPON1Q9HCB6 807 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 MAP10Q9P2G4 905 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 ACEP12821 1306 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 TULP4Q9NRJ4 1543 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 KNDC1Q76NI1 1749 aa6.7□□□□□ -1.34
LDLR-209ENST00000558528 A0A1W2PP64 1363 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 MYO5BQ9ULV0 1848 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 EDC4Q6P2E9 1401 aaKnown RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 ANKRD62A6NC57 917 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 FYB1O15117 783 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 ZBTB7BO15156 539 aaPredicted RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 KCNQ2O43526 872 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 RNF40O75150 1001 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 CCNYL3P0C7X3 344 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 PRELPP51888 382 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 HDLBPQ00341 1268 aaKnown RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 XPCQ01831 940 aaPredicted RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 EVX2Q03828 476 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 GNL2Q13823 731 aaKnown RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 CNGB1Q14028 1251 aaPredicted RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 ZBTB33Q86T24 672 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 TPCN2Q8NHX9 752 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 HELQQ8TDG4 1101 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 PNISRQ8TF01 805 aaKnown RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 TANGO6Q9C0B7 1094 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 NBPF3Q9H094 633 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 ANO2Q9NQ90 1003 aa6.69□□□□□ -1.34
LDLR-209ENST00000558528 SEPT9Q9UHD8 586 aaPredicted RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 DNMT3AQ9Y6K1 912 aaPredicted RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 ARHGEF28Q8N1W1 1705 aaKnown RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 GOLGB1Q14789 3259 aaKnown RBP6.69□□□□□ -1.34
LDLR-209ENST00000558528 CPSF1Q10570 1443 aaKnown RBP6.68□□□□□ -1.34
LDLR-209ENST00000558528 ADGRL3Q9HAR2 1447 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 QRICH2Q9H0J4 1663 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 EIF5BO60841 1220 aaKnown RBP6.68□□□□□ -1.34
LDLR-209ENST00000558528 NPR3P17342 541 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 WEE1P30291 646 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 SCNN1AP37088 669 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 TAGLNQ01995 201 aaKnown RBP6.68□□□□□ -1.34
LDLR-209ENST00000558528 EZH2Q15910 746 aaKnown RBP6.68□□□□□ -1.34
LDLR-209ENST00000558528 ECM1Q16610 540 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 ESCO1Q5FWF5 840 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 BRICD5Q6PL45 260 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 DPH6Q7L8W6 267 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 DZIP3Q86Y13 1208 aaKnown RBP6.68□□□□□ -1.34
LDLR-209ENST00000558528 FAM9BQ8IZU0 186 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 ADAM32Q8TC27 787 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 CAMKK2Q96RR4 588 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 CHMP4AQ9BY43 222 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 TGIF2Q9GZN2 237 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 KIAA1024Q9UPX6 916 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 TMA7Q9Y2S6 64 aaKnown RBP6.68□□□□□ -1.34
LDLR-209ENST00000558528 ADGRB2O60241 1585 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 TTC21BQ7Z4L5 1316 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 PRR36Q9H6K5 1346 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 POLR3AO14802 1390 aaPredicted RBP6.68□□□□□ -1.34
LDLR-209ENST00000558528 RREB1Q92766 1687 aa6.68□□□□□ -1.34
LDLR-209ENST00000558528 FOXO3O43524 673 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 PRPF40AO75400 957 aaKnown RBP6.67□□□□□ -1.34
LDLR-209ENST00000558528 NEFMP07197 916 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 P4HBP07237 508 aaKnown RBP6.67□□□□□ -1.34
LDLR-209ENST00000558528 FMR1Q06787 632 aaKnown RBP eCLIP6.67□□□□□ -1.34
LDLR-209ENST00000558528 USP4Q13107 963 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 OXLD1Q5BKU9 147 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 RNF19BQ6ZMZ0 732 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.67□□□□□ -1.34
LDLR-209ENST00000558528 DMRTB1Q96MA1 342 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 YTHDC1Q96MU7 727 aaKnown RBP6.67□□□□□ -1.34
LDLR-209ENST00000558528 HINFPQ9BQA5 517 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 EVA1BQ9NVM1 165 aa6.67□□□□□ -1.34
LDLR-209ENST00000558528 TREHO43280 583 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 NR1I2O75469 434 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 HSPA6P17066 643 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 MTHFSP49914 203 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 VPS72Q15906 364 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 PUS10Q3MIT2 529 aaKnown RBP6.66□□□□□ -1.34
LDLR-209ENST00000558528 KCNH5Q8NCM2 988 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 PMFBP1Q8TBY8 1022 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 GGNBP2Q9H3C7 697 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 CCSER2Q9H7U1 834 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms