RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 DNAI1Q9UI46 699 aa13.29□□□□□ -0.28
LDLR-208ENST00000558518 ZNF330Q9Y3S2 320 aaPredicted RBP13.29□□□□□ -0.28
LDLR-208ENST00000558518 ARHGAP31Q2M1Z3 1444 aa13.29□□□□□ -0.28
LDLR-208ENST00000558518 CDK12Q9NYV4 1490 aaPredicted RBP13.29□□□□□ -0.28
LDLR-208ENST00000558518 DLG5Q8TDM6 1919 aa13.29□□□□□ -0.28
LDLR-208ENST00000558518 CCDC34Q96HJ3 373 aa13.28□□□□□ -0.28
LDLR-208ENST00000558518 IFNKQ9P0W0 207 aa13.28□□□□□ -0.28
LDLR-208ENST00000558518 CTIFO43310 598 aaKnown RBP13.28□□□□□ -0.28
LDLR-208ENST00000558518 ZNF530Q6P9A1 599 aaPredicted RBP13.28□□□□□ -0.28
LDLR-208ENST00000558518 SSH2Q76I76 1423 aa13.28□□□□□ -0.28
LDLR-208ENST00000558518 ARHGAP29Q52LW3 1261 aa13.28□□□□□ -0.28
LDLR-208ENST00000558518 ZNF397Q8NF99 534 aaPredicted RBP13.28□□□□□ -0.28
LDLR-208ENST00000558518 BICC1Q9H694 974 aaKnown RBP13.28□□□□□ -0.28
LDLR-208ENST00000558518 CRB1P82279 1406 aa13.28□□□□□ -0.28
LDLR-208ENST00000558518 CPSF1Q10570 1443 aaKnown RBP13.28□□□□□ -0.28
LDLR-208ENST00000558518 RPS6KB1P23443 525 aa13.27□□□□□ -0.28
LDLR-208ENST00000558518 HAND2P61296 217 aa13.27□□□□□ -0.28
LDLR-208ENST00000558518 NECTIN1Q15223 517 aa13.27□□□□□ -0.28
LDLR-208ENST00000558518 TTLL5Q6EMB2 1281 aa13.27□□□□□ -0.28
LDLR-208ENST00000558518 CREBRFQ8IUR6 639 aa13.27□□□□□ -0.28
LDLR-208ENST00000558518 NOL10Q9BSC4 688 aaKnown RBP13.27□□□□□ -0.28
LDLR-208ENST00000558518 DDX41Q9UJV9 622 aaKnown RBP13.27□□□□□ -0.28
LDLR-208ENST00000558518 CEP57L1Q8IYX8 460 aa13.27□□□□□ -0.29
LDLR-208ENST00000558518 NEK1Q96PY6 1258 aa13.27□□□□□ -0.29
LDLR-208ENST00000558518 GJB4Q9NTQ9 266 aa13.27□□□□□ -0.29
LDLR-208ENST00000558518 ATP7BP35670 1465 aa13.27□□□□□ -0.29
LDLR-208ENST00000558518 SLU7O95391 586 aaKnown RBP13.27□□□□□ -0.29
LDLR-208ENST00000558518 HSP90AB3PQ58FF7 597 aa13.27□□□□□ -0.29
LDLR-208ENST00000558518 USP28Q96RU2 1077 aa13.27□□□□□ -0.29
LDLR-208ENST00000558518 SEC31AO94979 1220 aaKnown RBP13.26□□□□□ -0.29
LDLR-208ENST00000558518 TNNT3P45378 269 aaPredicted RBP13.26□□□□□ -0.29
LDLR-208ENST00000558518 STK38Q15208 465 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 STX1AQ16623 288 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 NEK11Q8NG66 645 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 CFAP45Q9UL16 551 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 CCDC66A2RUB6 948 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 SFPQP23246 707 aaKnown RBP eCLIP13.26□□□□□ -0.29
LDLR-208ENST00000558518 SLC39A6Q13433 755 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 TOB2Q14106 344 aaPredicted RBP13.26□□□□□ -0.29
LDLR-208ENST00000558518 PLA2G4DQ86XP0 818 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 NRDCO43847 1150 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 ANKRD1Q15327 319 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 BEND3Q5T5X7 828 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 SUCLG2Q96I99 432 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 CCDC85AQ96PX6 553 aaPredicted RBP13.26□□□□□ -0.29
LDLR-208ENST00000558518 GOLPH3LQ9H4A5 285 aa13.26□□□□□ -0.29
LDLR-208ENST00000558518 NEURL4Q96JN8 1562 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 SLFN14P0C7P3 912 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 GYS2P54840 703 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 FAM69CQ0P6D2 419 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 TERF2Q15554 542 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 AATKQ6ZMQ8 1374 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 ATP5J2-PTCD1G3V325 749 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 PTCD1O75127 700 aaKnown RBP13.25□□□□□ -0.29
LDLR-208ENST00000558518 MARCKSP29966 332 aaPredicted RBP13.25□□□□□ -0.29
LDLR-208ENST00000558518 CEBPAP49715 358 aaPredicted RBP13.25□□□□□ -0.29
LDLR-208ENST00000558518 TDRD7Q8NHU6 1098 aaKnown RBP13.25□□□□□ -0.29
LDLR-208ENST00000558518 UBXN4Q92575 508 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 ZCCHC17Q9NP64 241 aaKnown RBP13.25□□□□□ -0.29
LDLR-208ENST00000558518 ATP2B1P20020 1258 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 TEX35Q5T0J7 233 aa13.25□□□□□ -0.29
LDLR-208ENST00000558518 ALKQ9UM73 1620 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 SERPINC1P01008 464 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 CERS3Q8IU89 383 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 XPO4Q9C0E2 1151 aaKnown RBP13.24□□□□□ -0.29
LDLR-208ENST00000558518 A0A0G2JLW4 131 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 MAP4K1Q92918 833 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 ANO10Q9NW15 660 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 MYO5BQ9ULV0 1848 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 PIK3C2BO00750 1634 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 PTPDC1A2A3K4 754 aa13.24□□□□□ -0.29
LDLR-208ENST00000558518 GTF2E1P29083 439 aaPredicted RBP13.24□□□□□ -0.29
LDLR-208ENST00000558518 GPHNQ9NQX3 736 aaPredicted RBP13.24□□□□□ -0.29
LDLR-208ENST00000558518 SASH1O94885 1247 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 POLA2Q14181 598 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 CFAP100Q494V2 611 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 TIGD1Q96MW7 591 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 SNRKQ9NRH2 765 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 SCRN1Q12765 414 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 DPCR1Q3MIW9 517 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 C1orf141Q5JVX7 400 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 MYD88Q99836 296 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 TTC41PQ6P2S7 1318 aa13.23□□□□□ -0.29
LDLR-208ENST00000558518 GOLIM4O00461 696 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 SIGLEC1Q9BZZ2 1709 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 AOX1Q06278 1338 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 REREQ9P2R6 1566 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 TRIM34Q9BYJ4 488 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 RXRAP19793 462 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 HOXC9P31274 260 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 RBM6P78332 1123 aaKnown RBP13.22□□□□□ -0.29
LDLR-208ENST00000558518 TMCO3Q6UWJ1 677 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 UTP14AQ9BVJ6 771 aaKnown RBP13.22□□□□□ -0.29
LDLR-208ENST00000558518 CARD6Q9BX69 1037 aa13.22□□□□□ -0.29
LDLR-208ENST00000558518 NAT10Q9H0A0 1025 aaKnown RBP13.22□□□□□ -0.29
LDLR-208ENST00000558518 GABPB1Q06547 395 aaPredicted RBP13.21□□□□□ -0.29
LDLR-208ENST00000558518 ERC1Q8IUD2 1116 aa13.21□□□□□ -0.29
LDLR-208ENST00000558518 ERO1AQ96HE7 468 aa13.21□□□□□ -0.29
LDLR-208ENST00000558518 CPLX1O14810 134 aa13.21□□□□□ -0.29
LDLR-208ENST00000558518 EIF4A1P60842 406 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms