RNA–Protein interactions for RNA: ENST00000556564.5

PTPN21-208, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN21, Length 6,166 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-208ENST00000556564 SHROOM2Q13796 1616 aa20.23■□□□□ 0.83
PTPN21-208ENST00000556564 MAGEB6Q8N7X4 407 aa20.23■□□□□ 0.83
PTPN21-208ENST00000556564 PAG1Q9NWQ8 432 aa20.23■□□□□ 0.83
PTPN21-208ENST00000556564 UFL1O94874 794 aa20.23■□□□□ 0.83
PTPN21-208ENST00000556564 PER1O15534 1290 aaPredicted RBP20.23■□□□□ 0.83
PTPN21-208ENST00000556564 NEK1Q96PY6 1258 aa20.23■□□□□ 0.83
PTPN21-208ENST00000556564 KIF5BP33176 963 aa20.22■□□□□ 0.83
PTPN21-208ENST00000556564 PTPRTO14522 1441 aa20.22■□□□□ 0.83
PTPN21-208ENST00000556564 CCDC194A0A1B0GVG4 234 aa20.22■□□□□ 0.83
PTPN21-208ENST00000556564 ITGA6P23229 1130 aa20.22■□□□□ 0.83
PTPN21-208ENST00000556564 SMARCE1Q969G3 411 aa20.22■□□□□ 0.83
PTPN21-208ENST00000556564 LMOD1P29536 600 aaPredicted RBP20.22■□□□□ 0.83
PTPN21-208ENST00000556564 USP16Q9Y5T5 823 aa20.22■□□□□ 0.83
PTPN21-208ENST00000556564 METAP2P50579 478 aaKnown RBP eCLIP20.21■□□□□ 0.83
PTPN21-208ENST00000556564 SH2B1Q9NRF2 756 aaPredicted RBP20.21■□□□□ 0.83
PTPN21-208ENST00000556564 METTL22Q9BUU2 404 aaPredicted RBP20.21■□□□□ 0.83
PTPN21-208ENST00000556564 PCDHB15Q9Y5E8 787 aa20.21■□□□□ 0.83
PTPN21-208ENST00000556564 CCDC192P0DO97 292 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 ZFYP08048 801 aaPredicted RBP20.2■□□□□ 0.82
PTPN21-208ENST00000556564 PARP10Q53GL7 1025 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 SPC24Q8NBT2 197 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 SDSP20132 328 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 LIMCH1Q9UPQ0 1083 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 ROBO2Q9HCK4 1378 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 H0YIN7 160 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 SLC26A6Q9BXS9 759 aa20.2■□□□□ 0.82
PTPN21-208ENST00000556564 LDHBP07195 334 aaKnown RBP20.2■□□□□ 0.82
PTPN21-208ENST00000556564 PDE1AP54750 535 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 CEP85Q6P2H3 762 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 LRRC2Q9BYS8 371 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 DNAJC5Q9H3Z4 198 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 HDAC1Q13547 482 aaPredicted RBP20.19■□□□□ 0.82
PTPN21-208ENST00000556564 CAMK4Q16566 473 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 MCMDC2Q4G0Z9 681 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 IFIT1BQ5T764 474 aaKnown RBP20.19■□□□□ 0.82
PTPN21-208ENST00000556564 PPP4R3AQ6IN85 833 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 KIAA0232Q92628 1395 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 NF2P35240 595 aa20.19■□□□□ 0.82
PTPN21-208ENST00000556564 WTAPQ15007 396 aa20.18■□□□□ 0.82
PTPN21-208ENST00000556564 UBA5Q9GZZ9 404 aa20.18■□□□□ 0.82
PTPN21-208ENST00000556564 TRPC5Q9UL62 973 aaPredicted RBP20.18■□□□□ 0.82
PTPN21-208ENST00000556564 LIG1P18858 919 aa20.18■□□□□ 0.82
PTPN21-208ENST00000556564 BMP2KLQ5H9B9 411 aa20.18■□□□□ 0.82
PTPN21-208ENST00000556564 PAF1Q8N7H5 531 aa20.18■□□□□ 0.82
PTPN21-208ENST00000556564 CAGE1Q8TC20 777 aa20.18■□□□□ 0.82
PTPN21-208ENST00000556564 IARSP41252 1262 aaKnown RBP20.18■□□□□ 0.82
PTPN21-208ENST00000556564 ZNF594Q96JF6 807 aaPredicted RBP20.18■□□□□ 0.82
PTPN21-208ENST00000556564 SH3TC1Q8TE82 1336 aa20.18■□□□□ 0.82
PTPN21-208ENST00000556564 TMEM266Q2M3C6 531 aa20.17■□□□□ 0.82
PTPN21-208ENST00000556564 SEPT11Q9NVA2 429 aaKnown RBP20.17■□□□□ 0.82
PTPN21-208ENST00000556564 NMIQ13287 307 aaPredicted RBP20.17■□□□□ 0.82
PTPN21-208ENST00000556564 KRT23Q9C075 422 aa20.17■□□□□ 0.82
PTPN21-208ENST00000556564 FAM182BQ5T319 152 aa20.17■□□□□ 0.82
PTPN21-208ENST00000556564 NUP62CLQ9H1M0 184 aa20.17■□□□□ 0.82
PTPN21-208ENST00000556564 PDE8AO60658 829 aa20.17■□□□□ 0.82
PTPN21-208ENST00000556564 PHKG2P15735 406 aa20.17■□□□□ 0.82
PTPN21-208ENST00000556564 ZNF496Q96IT1 587 aaPredicted RBP20.17■□□□□ 0.82
PTPN21-208ENST00000556564 MCM5P33992 734 aa20.16■□□□□ 0.82
PTPN21-208ENST00000556564 CCDC39Q9UFE4 941 aa20.16■□□□□ 0.82
PTPN21-208ENST00000556564 ERVV-2B6SEH9 535 aa20.16■□□□□ 0.82
PTPN21-208ENST00000556564 MCM9Q9NXL9 1143 aa20.16■□□□□ 0.82
PTPN21-208ENST00000556564 RLBP1P12271 317 aa20.16■□□□□ 0.82
PTPN21-208ENST00000556564 CCDC12Q8WUD4 166 aaPredicted RBP20.16■□□□□ 0.82
PTPN21-208ENST00000556564 USP19O94966 1318 aa20.16■□□□□ 0.82
PTPN21-208ENST00000556564 RXRBP28702 533 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 PLS1Q14651 629 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 HMG20BQ9P0W2 317 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 GJB2P29033 226 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 ZNHIT6Q9NWK9 470 aaKnown RBP20.15■□□□□ 0.82
PTPN21-208ENST00000556564 SAP30BPQ9UHR5 308 aaKnown RBP20.15■□□□□ 0.82
PTPN21-208ENST00000556564 GGA1Q9UJY5 639 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 TRIM35Q9UPQ4 493 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 BAG4O95429 457 aaKnown RBP20.15■□□□□ 0.82
PTPN21-208ENST00000556564 PPFIBP1Q86W92 1011 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 ESR2Q92731 530 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 DEF6Q9H4E7 631 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 ABCC3O15438 1527 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 HMGN5P82970 282 aaKnown RBP20.15■□□□□ 0.82
PTPN21-208ENST00000556564 KLHDC4Q8TBB5 520 aa20.15■□□□□ 0.82
PTPN21-208ENST00000556564 CCDC191Q8NCU4 936 aa20.14■□□□□ 0.82
PTPN21-208ENST00000556564 CDC42BPAQ5VT25 1732 aa20.14■□□□□ 0.82
PTPN21-208ENST00000556564 KLF18A0A0U1RQI7 1052 aa20.14■□□□□ 0.81
PTPN21-208ENST00000556564 TRIM37O94972 964 aa20.14■□□□□ 0.81
PTPN21-208ENST00000556564 SAMM50Q9Y512 469 aa20.14■□□□□ 0.81
PTPN21-208ENST00000556564 TAF5LO75529 589 aa20.14■□□□□ 0.81
PTPN21-208ENST00000556564 RNF113AO15541 343 aaKnown RBP20.14■□□□□ 0.81
PTPN21-208ENST00000556564 SOS1Q07889 1333 aaPredicted RBP20.13■□□□□ 0.81
PTPN21-208ENST00000556564 DPP8Q6V1X1 898 aaPredicted RBP20.13■□□□□ 0.81
PTPN21-208ENST00000556564 RBM8AQ9Y5S9 174 aaKnown RBP20.13■□□□□ 0.81
PTPN21-208ENST00000556564 KCNQ3O43525 872 aa20.13■□□□□ 0.81
PTPN21-208ENST00000556564 ZNF772Q68DY9 489 aaPredicted RBP20.13■□□□□ 0.81
PTPN21-208ENST00000556564 FBXO3Q9UK99 471 aa20.13■□□□□ 0.81
PTPN21-208ENST00000556564 TCEANC2Q96MN5 208 aa20.13■□□□□ 0.81
PTPN21-208ENST00000556564 RAB34Q9BZG1 259 aa20.13■□□□□ 0.81
PTPN21-208ENST00000556564 BABAM1Q9NWV8 329 aa20.13■□□□□ 0.81
PTPN21-208ENST00000556564 ORC3Q9UBD5 711 aaPredicted RBP20.13■□□□□ 0.81
PTPN21-208ENST00000556564 PRDM15P57071 1507 aaPredicted RBP20.13■□□□□ 0.81
PTPN21-208ENST00000556564 ZNF408Q9H9D4 720 aa20.12■□□□□ 0.81
PTPN21-208ENST00000556564 HEATR3Q7Z4Q2 680 aa20.12■□□□□ 0.81
PTPN21-208ENST00000556564 HIBADHP31937 336 aaKnown RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms