RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 TMEM57Q8N5G2 664 aa21.57■■□□□ 1.04
SHOX-204ENST00000554971 NLGN2Q8NFZ4 835 aa21.57■■□□□ 1.04
SHOX-204ENST00000554971 RIC1Q4ADV7 1423 aa21.57■■□□□ 1.04
SHOX-204ENST00000554971 TAF1P21675 1872 aa21.56■■□□□ 1.04
SHOX-204ENST00000554971 NPHP1O15259 732 aa21.56■■□□□ 1.04
SHOX-204ENST00000554971 GTF2E1P29083 439 aaPredicted RBP21.56■■□□□ 1.04
SHOX-204ENST00000554971 ST5P78524 1137 aa21.56■■□□□ 1.04
SHOX-204ENST00000554971 SLC10A5Q5PT55 438 aa21.56■■□□□ 1.04
SHOX-204ENST00000554971 UBE3BQ7Z3V4 1068 aa21.56■■□□□ 1.04
SHOX-204ENST00000554971 BRIP1Q9BX63 1249 aa21.56■■□□□ 1.04
SHOX-204ENST00000554971 CD2APQ9Y5K6 639 aa21.56■■□□□ 1.04
SHOX-204ENST00000554971 NBPF7P0C2Y1 421 aaPredicted RBP21.55■■□□□ 1.04
SHOX-204ENST00000554971 CCT4P50991 539 aaKnown RBP21.55■■□□□ 1.04
SHOX-204ENST00000554971 SYT17Q9BSW7 474 aa21.55■■□□□ 1.04
SHOX-204ENST00000554971 USP44Q9H0E7 712 aa21.55■■□□□ 1.04
SHOX-204ENST00000554971 KLRG2A4D1S0 409 aaPredicted RBP21.55■■□□□ 1.04
SHOX-204ENST00000554971 GRM8O00222 908 aa21.55■■□□□ 1.04
SHOX-204ENST00000554971 BECN1Q14457 450 aa21.54■■□□□ 1.04
SHOX-204ENST00000554971 CACNA1SQ13698 1873 aa21.54■■□□□ 1.04
SHOX-204ENST00000554971 UTYO14607 1347 aa21.54■■□□□ 1.04
SHOX-204ENST00000554971 IRS4O14654 1257 aaPredicted RBP21.53■■□□□ 1.04
SHOX-204ENST00000554971 CHRNA5P30532 468 aa21.53■■□□□ 1.04
SHOX-204ENST00000554971 CDHR2Q9BYE9 1310 aa21.53■■□□□ 1.04
SHOX-204ENST00000554971 KCNA3P22001 575 aa21.53■■□□□ 1.04
SHOX-204ENST00000554971 COL4A1P02462 1669 aa21.52■■□□□ 1.04
SHOX-204ENST00000554971 CRY2Q49AN0 593 aa21.52■■□□□ 1.04
SHOX-204ENST00000554971 A0A0G2JLW4 131 aa21.51■■□□□ 1.03
SHOX-204ENST00000554971 KAZALD1Q96I82 304 aa21.51■■□□□ 1.03
SHOX-204ENST00000554971 C9orf78Q9NZ63 289 aaPredicted RBP21.51■■□□□ 1.03
SHOX-204ENST00000554971 DPEP1P16444 411 aa21.51■■□□□ 1.03
SHOX-204ENST00000554971 MEIS3Q99687 375 aa21.51■■□□□ 1.03
SHOX-204ENST00000554971 PDE6BP35913 854 aa21.5■■□□□ 1.03
SHOX-204ENST00000554971 TGFB2P61812 414 aa21.5■■□□□ 1.03
SHOX-204ENST00000554971 SRGNP10124 158 aa21.49■■□□□ 1.03
SHOX-204ENST00000554971 EPHA10Q5JZY3 1008 aa21.49■■□□□ 1.03
SHOX-204ENST00000554971 SLX4Q8IY92 1834 aa21.48■■□□□ 1.03
SHOX-204ENST00000554971 C2CD5Q86YS7 1000 aa21.48■■□□□ 1.03
SHOX-204ENST00000554971 SUCLG2Q96I99 432 aa21.48■■□□□ 1.03
SHOX-204ENST00000554971 TBC1D32Q96NH3 1257 aa21.48■■□□□ 1.03
SHOX-204ENST00000554971 NLRP3Q96P20 1036 aa21.48■■□□□ 1.03
SHOX-204ENST00000554971 PLA2G12BQ9BX93 195 aa21.48■■□□□ 1.03
SHOX-204ENST00000554971 PDE8AO60658 829 aa21.47■■□□□ 1.03
SHOX-204ENST00000554971 FOXO4P98177 505 aa21.47■■□□□ 1.03
SHOX-204ENST00000554971 H0YIN7 160 aa21.46■■□□□ 1.03
SHOX-204ENST00000554971 SF3B3Q15393 1217 aaKnown RBP21.46■■□□□ 1.03
SHOX-204ENST00000554971 GCC1Q96CN9 775 aa21.46■■□□□ 1.03
SHOX-204ENST00000554971 WWC3Q9ULE0 1092 aa21.46■■□□□ 1.03
SHOX-204ENST00000554971 ZBTB7BO15156 539 aaPredicted RBP21.45■■□□□ 1.02
SHOX-204ENST00000554971 SEC24BO95487 1268 aa21.45■■□□□ 1.02
SHOX-204ENST00000554971 CTSWP56202 376 aa21.45■■□□□ 1.02
SHOX-204ENST00000554971 NUCB1Q02818 461 aa21.45■■□□□ 1.02
SHOX-204ENST00000554971 TTLL11Q8NHH1 800 aa21.45■■□□□ 1.02
SHOX-204ENST00000554971 CCDC85AQ96PX6 553 aaPredicted RBP21.45■■□□□ 1.02
SHOX-204ENST00000554971 HOXA10P31260 410 aaPredicted RBP21.44■■□□□ 1.02
SHOX-204ENST00000554971 BICC1Q9H694 974 aaKnown RBP21.44■■□□□ 1.02
SHOX-204ENST00000554971 SPEF2Q9C093 1822 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 ARFGEF1Q9Y6D6 1849 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 CSF1RP07333 972 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 SLC51AQ86UW1 340 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 MASTLQ96GX5 879 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 UBTFL1P0CB47 393 aaPredicted RBP21.43■■□□□ 1.02
SHOX-204ENST00000554971 NPR1P16066 1061 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 NFKBIBQ15653 356 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 ANKRD44Q8N8A2 993 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 GREM2Q9H772 168 aa21.43■■□□□ 1.02
SHOX-204ENST00000554971 SLC4A3P48751 1232 aa21.42■■□□□ 1.02
SHOX-204ENST00000554971 SEC31BQ9NQW1 1179 aa21.42■■□□□ 1.02
SHOX-204ENST00000554971 LRRFIP2Q9Y608 721 aaKnown RBP21.42■■□□□ 1.02
SHOX-204ENST00000554971 HSP90B1P14625 803 aaKnown RBP21.41■■□□□ 1.02
SHOX-204ENST00000554971 RABL6Q3YEC7 729 aaPredicted RBP21.41■■□□□ 1.02
SHOX-204ENST00000554971 STYK1Q6J9G0 422 aa21.41■■□□□ 1.02
SHOX-204ENST00000554971 ZNF622Q969S3 477 aaKnown RBP eCLIP21.41■■□□□ 1.02
SHOX-204ENST00000554971 LMBR1LQ6UX01 489 aa21.41■■□□□ 1.02
SHOX-204ENST00000554971 RPGRQ92834 1020 aaKnown RBP21.41■■□□□ 1.02
SHOX-204ENST00000554971 GNAI3P08754 354 aa21.4■■□□□ 1.02
SHOX-204ENST00000554971 PIM2Q9P1W9 311 aa21.4■■□□□ 1.02
SHOX-204ENST00000554971 RTL9Q8NET4 1388 aa21.4■■□□□ 1.02
SHOX-204ENST00000554971 EIF5BO60841 1220 aaKnown RBP21.39■■□□□ 1.02
SHOX-204ENST00000554971 CCDC152Q4G0S7 254 aa21.39■■□□□ 1.02
SHOX-204ENST00000554971 CELF1Q92879 486 aaKnown RBP21.39■■□□□ 1.02
SHOX-204ENST00000554971 C1orf115Q9H7X2 142 aa21.39■■□□□ 1.02
SHOX-204ENST00000554971 CHD1LQ86WJ1 897 aa21.39■■□□□ 1.01
SHOX-204ENST00000554971 CRAMP1Q96RY5 1269 aa21.39■■□□□ 1.01
SHOX-204ENST00000554971 PRPF40BQ6NWY9 871 aaKnown RBP21.38■■□□□ 1.01
SHOX-204ENST00000554971 TTLL6Q8N841 843 aa21.38■■□□□ 1.01
SHOX-204ENST00000554971 DDX46Q7L014 1031 aaKnown RBP21.37■■□□□ 1.01
SHOX-204ENST00000554971 RBM17Q96I25 401 aaKnown RBP21.37■■□□□ 1.01
SHOX-204ENST00000554971 LRRC37AA6NMS7 1700 aa21.37■■□□□ 1.01
SHOX-204ENST00000554971 YBX3P16989 372 aaKnown RBP eCLIP21.37■■□□□ 1.01
SHOX-204ENST00000554971 ITGA6P23229 1130 aa21.37■■□□□ 1.01
SHOX-204ENST00000554971 OLFM4Q6UX06 510 aa21.37■■□□□ 1.01
SHOX-204ENST00000554971 GNAI2P04899 355 aa21.36■■□□□ 1.01
SHOX-204ENST00000554971 GRAPQ13588 217 aa21.36■■□□□ 1.01
SHOX-204ENST00000554971 DALRD3Q5D0E6 543 aaKnown RBP21.36■■□□□ 1.01
SHOX-204ENST00000554971 GRAPLQ8TC17 118 aaPredicted RBP21.36■■□□□ 1.01
SHOX-204ENST00000554971 C7orf43Q8WVR3 580 aa21.36■■□□□ 1.01
SHOX-204ENST00000554971 CNKSR1Q969H4 720 aa21.36■■□□□ 1.01
SHOX-204ENST00000554971 ALDH1B1P30837 517 aa21.35■■□□□ 1.01
SHOX-204ENST00000554971 BCS1LQ9Y276 419 aa21.35■■□□□ 1.01
SHOX-204ENST00000554971 BMP2KLQ5H9B9 411 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms