RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NUP98P52948 1817 aa31.93■■■□□ 2.7
CCDC88C-205ENST00000553403 CCDC57Q2TAC2 916 aa31.92■■■□□ 2.7
CCDC88C-205ENST00000553403 BOLA2Q9H3K6 86 aa31.92■■■□□ 2.7
CCDC88C-205ENST00000553403 RAD50Q92878 1312 aa31.92■■■□□ 2.7
CCDC88C-205ENST00000553403 ONECUT3O60422 494 aaPredicted RBP31.92■■■□□ 2.7
CCDC88C-205ENST00000553403 CIZ1Q9ULV3 898 aaPredicted RBP31.92■■■□□ 2.7
CCDC88C-205ENST00000553403 GPTP24298 496 aa31.91■■■□□ 2.7
CCDC88C-205ENST00000553403 ITPK1Q13572 414 aa31.91■■■□□ 2.7
CCDC88C-205ENST00000553403 CWC27Q6UX04 472 aaKnown RBP31.91■■■□□ 2.7
CCDC88C-205ENST00000553403 KIAA1211Q6ZU35 1233 aa31.91■■■□□ 2.7
CCDC88C-205ENST00000553403 ZNF34Q8IZ26 560 aa31.91■■■□□ 2.7
CCDC88C-205ENST00000553403 LSG1Q9H089 658 aaKnown RBP31.91■■■□□ 2.7
CCDC88C-205ENST00000553403 HSPA4P34932 840 aa31.9■■■□□ 2.7
CCDC88C-205ENST00000553403 TBC1D2BQ9UPU7 963 aa31.9■■■□□ 2.7
CCDC88C-205ENST00000553403 CCDC125Q86Z20 511 aa31.89■■■□□ 2.7
CCDC88C-205ENST00000553403 KCNQ2O43526 872 aa31.89■■■□□ 2.7
CCDC88C-205ENST00000553403 KRT27Q7Z3Y8 459 aa31.89■■■□□ 2.7
CCDC88C-205ENST00000553403 DBNDD2Q9BQY9 259 aa31.89■■■□□ 2.7
CCDC88C-205ENST00000553403 THSD7AQ9UPZ6 1657 aa31.88■■■□□ 2.69
CCDC88C-205ENST00000553403 LRRC24Q50LG9 513 aa31.87■■■□□ 2.69
CCDC88C-205ENST00000553403 ZNF594Q96JF6 807 aaPredicted RBP31.87■■■□□ 2.69
CCDC88C-205ENST00000553403 RFX7Q2KHR2 1363 aa31.87■■■□□ 2.69
CCDC88C-205ENST00000553403 BRWD3Q6RI45 1802 aa31.87■■■□□ 2.69
CCDC88C-205ENST00000553403 HSP90AA1P07900 732 aaKnown RBP31.86■■■□□ 2.69
CCDC88C-205ENST00000553403 SNRKQ9NRH2 765 aa31.86■■■□□ 2.69
CCDC88C-205ENST00000553403 PALD1Q9ULE6 856 aa31.86■■■□□ 2.69
CCDC88C-205ENST00000553403 ZNF609O15014 1411 aa31.86■■■□□ 2.69
CCDC88C-205ENST00000553403 FRAT2O75474 233 aaPredicted RBP31.86■■■□□ 2.69
CCDC88C-205ENST00000553403 IFIT5Q13325 482 aaKnown RBP31.86■■■□□ 2.69
CCDC88C-205ENST00000553403 TRMT112Q9UI30 125 aaKnown RBP31.86■■■□□ 2.69
CCDC88C-205ENST00000553403 MCM2P49736 904 aa31.85■■■□□ 2.69
CCDC88C-205ENST00000553403 HAUS7Q99871 368 aa31.85■■■□□ 2.69
CCDC88C-205ENST00000553403 FSD1Q9BTV5 496 aa31.85■■■□□ 2.69
CCDC88C-205ENST00000553403 COL5A3P25940 1745 aaPredicted RBP31.84■■■□□ 2.69
CCDC88C-205ENST00000553403 IRS4O14654 1257 aaPredicted RBP31.84■■■□□ 2.69
CCDC88C-205ENST00000553403 CTSWP56202 376 aa31.84■■■□□ 2.69
CCDC88C-205ENST00000553403 AK7Q96M32 723 aa31.84■■■□□ 2.69
CCDC88C-205ENST00000553403 CEP126Q9P2H0 1117 aa31.84■■■□□ 2.69
CCDC88C-205ENST00000553403 UBN2Q6ZU65 1347 aa31.83■■■□□ 2.69
CCDC88C-205ENST00000553403 PDE8AO60658 829 aa31.83■■■□□ 2.69
CCDC88C-205ENST00000553403 CAMTA2O94983 1202 aa31.83■■■□□ 2.69
CCDC88C-205ENST00000553403 SF3B2Q13435 895 aaKnown RBP31.83■■■□□ 2.69
CCDC88C-205ENST00000553403 TTLL11Q8NHH1 800 aa31.83■■■□□ 2.69
CCDC88C-205ENST00000553403 PUS3Q9BZE2 481 aaKnown RBP31.83■■■□□ 2.69
CCDC88C-205ENST00000553403 NEK4P51957 841 aa31.82■■■□□ 2.68
CCDC88C-205ENST00000553403 NMIQ13287 307 aaPredicted RBP31.82■■■□□ 2.68
CCDC88C-205ENST00000553403 TAF7LQ5H9L4 462 aa31.82■■■□□ 2.68
CCDC88C-205ENST00000553403 TICAM2Q86XR7 235 aa31.82■■■□□ 2.68
CCDC88C-205ENST00000553403 SYNE4Q8N205 404 aa31.81■■■□□ 2.68
CCDC88C-205ENST00000553403 AKAP2Q9Y2D5 859 aa31.81■■■□□ 2.68
CCDC88C-205ENST00000553403 MYH14Q7Z406 1995 aaKnown RBP31.81■■■□□ 2.68
CCDC88C-205ENST00000553403 PARP10Q53GL7 1025 aa31.8■■■□□ 2.68
CCDC88C-205ENST00000553403 NEUROD6Q96NK8 337 aa31.8■■■□□ 2.68
CCDC88C-205ENST00000553403 MYH3P11055 1940 aa31.8■■■□□ 2.68
CCDC88C-205ENST00000553403 EP400Q96L91 3159 aa31.79■■■□□ 2.68
CCDC88C-205ENST00000553403 ANKRD18BA2A2Z9 1011 aa31.78■■■□□ 2.68
CCDC88C-205ENST00000553403 TIMM10P62072 90 aa31.78■■■□□ 2.68
CCDC88C-205ENST00000553403 PPIL4Q8WUA2 492 aaKnown RBP eCLIP31.78■■■□□ 2.68
CCDC88C-205ENST00000553403 CCDC171Q6TFL3 1326 aa31.77■■■□□ 2.68
CCDC88C-205ENST00000553403 A0A1B0GUL7 405 aa31.77■■■□□ 2.68
CCDC88C-205ENST00000553403 ITGA6P23229 1130 aa31.77■■■□□ 2.68
CCDC88C-205ENST00000553403 KCNB2Q92953 911 aa31.77■■■□□ 2.68
CCDC88C-205ENST00000553403 FAM227BQ96M60 508 aa31.77■■■□□ 2.68
CCDC88C-205ENST00000553403 SNX14Q9Y5W7 946 aa31.77■■■□□ 2.68
CCDC88C-205ENST00000553403 GREM2Q9H772 168 aa31.76■■■□□ 2.68
CCDC88C-205ENST00000553403 NHSQ6T4R5 1651 aa31.76■■■□□ 2.67
CCDC88C-205ENST00000553403 SUSD4Q5VX71 490 aa31.76■■■□□ 2.67
CCDC88C-205ENST00000553403 UTP14AQ9BVJ6 771 aaKnown RBP31.76■■■□□ 2.67
CCDC88C-205ENST00000553403 MED23Q9ULK4 1368 aa31.76■■■□□ 2.67
CCDC88C-205ENST00000553403 SH3TC1Q8TE82 1336 aa31.75■■■□□ 2.67
CCDC88C-205ENST00000553403 CNTNAP4Q9C0A0 1308 aa31.75■■■□□ 2.67
CCDC88C-205ENST00000553403 PTH1RQ03431 593 aa31.75■■■□□ 2.67
CCDC88C-205ENST00000553403 LINC00116Q8NCU8 138 aa31.75■■■□□ 2.67
CCDC88C-205ENST00000553403 CCDC85AQ96PX6 553 aaPredicted RBP31.75■■■□□ 2.67
CCDC88C-205ENST00000553403 A0A0D9SFI3 127 aa31.74■■■□□ 2.67
CCDC88C-205ENST00000553403 RGL2O15211 777 aa31.74■■■□□ 2.67
CCDC88C-205ENST00000553403 EDC3Q96F86 508 aaKnown RBP31.74■■■□□ 2.67
CCDC88C-205ENST00000553403 DNAJC2Q99543 621 aaKnown RBP31.74■■■□□ 2.67
CCDC88C-205ENST00000553403 CWC22Q9HCG8 908 aaKnown RBP31.74■■■□□ 2.67
CCDC88C-205ENST00000553403 ZNF652Q9Y2D9 606 aa31.74■■■□□ 2.67
CCDC88C-205ENST00000553403 RIPOR2Q9Y4F9 1068 aa31.74■■■□□ 2.67
CCDC88C-205ENST00000553403 HSP90B1P14625 803 aaKnown RBP31.73■■■□□ 2.67
CCDC88C-205ENST00000553403 FOXD4L1Q9NU39 408 aa31.73■■■□□ 2.67
CCDC88C-205ENST00000553403 BCORQ6W2J9 1755 aa31.73■■■□□ 2.67
CCDC88C-205ENST00000553403 KBTBD3Q8NAB2 608 aa31.73■■■□□ 2.67
CCDC88C-205ENST00000553403 MAP4K1Q92918 833 aa31.73■■■□□ 2.67
CCDC88C-205ENST00000553403 RAB3GAP1Q15042 981 aa31.72■■■□□ 2.67
CCDC88C-205ENST00000553403 CLEC4GQ6UXB4 293 aa31.72■■■□□ 2.67
CCDC88C-205ENST00000553403 RIC1Q4ADV7 1423 aa31.72■■■□□ 2.67
CCDC88C-205ENST00000553403 SPEF2Q9C093 1822 aa31.72■■■□□ 2.67
CCDC88C-205ENST00000553403 RC3H1Q5TC82 1133 aaKnown RBP31.71■■■□□ 2.67
CCDC88C-205ENST00000553403 LDHAL6AQ6ZMR3 332 aa31.71■■■□□ 2.67
CCDC88C-205ENST00000553403 NECTIN1Q15223 517 aa31.7■■■□□ 2.67
CCDC88C-205ENST00000553403 RASEFQ8IZ41 740 aa31.7■■■□□ 2.67
CCDC88C-205ENST00000553403 BTAF1O14981 1849 aa31.7■■■□□ 2.67
CCDC88C-205ENST00000553403 IFIT1P09914 478 aaKnown RBP31.7■■■□□ 2.66
CCDC88C-205ENST00000553403 CCDC158Q5M9N0 1113 aa31.7■■■□□ 2.66
CCDC88C-205ENST00000553403 PAG1Q9NWQ8 432 aa31.7■■■□□ 2.66
CCDC88C-205ENST00000553403 LRP5O75197 1615 aa31.69■■■□□ 2.66
CCDC88C-205ENST00000553403 METTL24Q5JXM2 366 aa31.69■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms