RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 RABGEF1Q9UJ41 708 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 PPP2R1AP30153 589 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 RETREG3Q86VR2 466 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 GNEQ9Y223 722 aaKnown RBP6.76□□□□□ -1.33
LIMA1-203ENST00000547825 BCL9O00512 1426 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 PSDA5PKW4 1024 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-203ENST00000547825 NCOA4Q13772 614 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 MORN1Q5T089 497 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 RNF214Q8ND24 703 aa6.76□□□□□ -1.33
LIMA1-203ENST00000547825 SOX11P35716 441 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 NR1H3Q13133 447 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 DRC7Q8IY82 874 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 CHMP5Q9NZZ3 219 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 UBR2Q8IWV8 1755 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 HOXB1P14653 301 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-203ENST00000547825 CARD14Q9BXL6 1004 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 KIAA1522Q9P206 1035 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-203ENST00000547825 COL5A2P05997 1499 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-203ENST00000547825 KIAA2012Q0VF49 1180 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 ANKRD45Q5TZF3 282 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 CASC1Q6TDU7 716 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 OCSTAMPQ9BR26 566 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 LNPKQ9C0E8 428 aa6.75□□□□□ -1.33
LIMA1-203ENST00000547825 COL5A3P25940 1745 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-203ENST00000547825 POTEHQ6S545 545 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 MKRN1Q9UHC7 482 aaKnown RBP6.74□□□□□ -1.33
LIMA1-203ENST00000547825 LRP5O75197 1615 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 ARHGEF10O15013 1369 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 N4BP2Q86UW6 1770 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-203ENST00000547825 CHAF1AQ13111 956 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-203ENST00000547825 C22orf23Q9BZE7 217 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 EDC4Q6P2E9 1401 aaKnown RBP6.74□□□□□ -1.33
LIMA1-203ENST00000547825 ZBBXA8MT70 800 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 RLBP1P12271 317 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 SSFA2P28290 1259 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 FAM98CQ17RN3 349 aaKnown RBP6.74□□□□□ -1.33
LIMA1-203ENST00000547825 LYPD8Q6UX82 237 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 DNAJC14Q6Y2X3 702 aaPredicted RBP6.74□□□□□ -1.33
LIMA1-203ENST00000547825 SCN11AQ9UI33 1791 aa6.74□□□□□ -1.33
LIMA1-203ENST00000547825 PANK2Q9BZ23 570 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 NPHP3Q7Z494 1330 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L15C9J2P7 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L10C9JJH3 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L13C9JLJ4 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L12C9JPN9 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L11C9JVI0 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L21D6R901 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L18D6R9N7 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L22D6RA61 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L17D6RBQ6 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L19D6RCP7 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L20D6RJB6 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 MRE11P49959 708 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 SLFN5Q08AF3 891 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 USP17L24Q0WX57 530 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 DDX17Q92841 729 aaKnown RBP6.73□□□□□ -1.33
LIMA1-203ENST00000547825 ZNF594Q96JF6 807 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-203ENST00000547825 STK26Q9P289 416 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 FKBPLQ9UIM3 349 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 DOT1LQ8TEK3 1739 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 ESPNB1AK53 854 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 PTK7Q13308 1070 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 GRIPAP1Q4V328 841 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 BTAF1O14981 1849 aa6.73□□□□□ -1.33
LIMA1-203ENST00000547825 COL3A1P02461 1466 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-203ENST00000547825 ANTXR1Q9H6X2 564 aa6.72□□□□□ -1.33
LIMA1-203ENST00000547825 RRAGDQ9NQL2 400 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-203ENST00000547825 ATF3P18847 181 aa6.72□□□□□ -1.33
LIMA1-203ENST00000547825 MCTP1Q6DN14 999 aa6.72□□□□□ -1.33
LIMA1-203ENST00000547825 RASA1P20936 1047 aa6.72□□□□□ -1.33
LIMA1-203ENST00000547825 KIAA1211Q6ZU35 1233 aa6.72□□□□□ -1.33
LIMA1-203ENST00000547825 CGNL1Q0VF96 1302 aa6.72□□□□□ -1.33
LIMA1-203ENST00000547825 A0A1W2PP64 1363 aa6.72□□□□□ -1.33
LIMA1-203ENST00000547825 GOLGA6L4A6NEF3 574 aa6.71□□□□□ -1.33
LIMA1-203ENST00000547825 NASPP49321 788 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-203ENST00000547825 LRRC59Q96AG4 307 aaKnown RBP6.71□□□□□ -1.33
LIMA1-203ENST00000547825 CDK19Q9BWU1 502 aa6.71□□□□□ -1.33
LIMA1-203ENST00000547825 PRDM10Q9NQV6 1147 aa6.71□□□□□ -1.33
LIMA1-203ENST00000547825 PDZRN3Q9UPQ7 1066 aa6.71□□□□□ -1.33
LIMA1-203ENST00000547825 ATAD2Q6PL18 1390 aa6.71□□□□□ -1.33
LIMA1-203ENST00000547825 F12P00748 615 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-203ENST00000547825 CLDN10P78369 228 aa6.71□□□□□ -1.34
LIMA1-203ENST00000547825 POTEAQ6S8J7 498 aa6.71□□□□□ -1.34
LIMA1-203ENST00000547825 NAP1L2Q9ULW6 460 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-203ENST00000547825 CHMP3Q9Y3E7 222 aa6.71□□□□□ -1.34
LIMA1-203ENST00000547825 PLEKHG2Q9H7P9 1386 aa6.71□□□□□ -1.34
LIMA1-203ENST00000547825 ANKRD36BQ8N2N9 1353 aa6.71□□□□□ -1.34
LIMA1-203ENST00000547825 MCM4P33991 863 aa6.71□□□□□ -1.34
LIMA1-203ENST00000547825 TAGLNQ01995 201 aaKnown RBP6.71□□□□□ -1.34
LIMA1-203ENST00000547825 ELOAQ14241 798 aaKnown RBP6.71□□□□□ -1.34
LIMA1-203ENST00000547825 CAVIN1Q6NZI2 390 aaKnown RBP6.71□□□□□ -1.34
LIMA1-203ENST00000547825 KCNJ4P48050 445 aa6.7□□□□□ -1.34
LIMA1-203ENST00000547825 VARS2Q5ST30 1063 aaKnown RBP6.7□□□□□ -1.34
LIMA1-203ENST00000547825 NUDT16Q96DE0 195 aaKnown RBP6.7□□□□□ -1.34
LIMA1-203ENST00000547825 ZFRQ96KR1 1074 aaKnown RBP6.7□□□□□ -1.34
LIMA1-203ENST00000547825 GRPEL1Q9HAV7 217 aa6.7□□□□□ -1.34
LIMA1-203ENST00000547825 TRAK1Q9UPV9 953 aa6.7□□□□□ -1.34
LIMA1-203ENST00000547825 KIAA1024Q9UPX6 916 aa6.7□□□□□ -1.34
LIMA1-203ENST00000547825 VPS9D1Q9Y2B5 631 aa6.7□□□□□ -1.34
LIMA1-203ENST00000547825 GAS2L2Q8NHY3 880 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms