RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PTPN12Q05209 780 aaKnown RBP14.96□□□□□ -0.02
RNF4-222ENST00000541204 F13A1P00488 732 aa14.95□□□□□ -0.02
RNF4-222ENST00000541204 KCNJ4P48050 445 aa14.95□□□□□ -0.02
RNF4-222ENST00000541204 NMIQ13287 307 aaPredicted RBP14.95□□□□□ -0.02
RNF4-222ENST00000541204 MRC1P22897 1456 aa14.95□□□□□ -0.02
RNF4-222ENST00000541204 ERVV-2B6SEH9 535 aa14.95□□□□□ -0.02
RNF4-222ENST00000541204 CCDC83Q8IWF9 413 aa14.95□□□□□ -0.02
RNF4-222ENST00000541204 RUFY2Q8WXA3 655 aa14.95□□□□□ -0.02
RNF4-222ENST00000541204 CHGBP05060 677 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 HCLS1P14317 486 aaPredicted RBP14.94□□□□□ -0.02
RNF4-222ENST00000541204 UBE2HP62256 183 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 ADCK5Q3MIX3 580 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 FAM184AQ8NB25 1140 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 ZNF830Q96NB3 372 aaPredicted RBP14.94□□□□□ -0.02
RNF4-222ENST00000541204 STRCQ7RTU9 1775 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 RFX5P48382 616 aaPredicted RBP14.94□□□□□ -0.02
RNF4-222ENST00000541204 KIAA2012Q0VF49 1180 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 CCDC85AQ96PX6 553 aaPredicted RBP14.94□□□□□ -0.02
RNF4-222ENST00000541204 DNAJC2Q99543 621 aaKnown RBP14.94□□□□□ -0.02
RNF4-222ENST00000541204 TMOD3Q9NYL9 352 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 DBNLQ9UJU6 430 aaKnown RBP14.94□□□□□ -0.02
RNF4-222ENST00000541204 ASAP1Q9ULH1 1129 aa14.94□□□□□ -0.02
RNF4-222ENST00000541204 JAKMIP1Q96N16 626 aaKnown RBP14.93□□□□□ -0.02
RNF4-222ENST00000541204 PKD1L3Q7Z443 1732 aa14.93□□□□□ -0.02
RNF4-222ENST00000541204 A0A0D9SFI3 127 aa14.93□□□□□ -0.02
RNF4-222ENST00000541204 GJB2P29033 226 aa14.93□□□□□ -0.02
RNF4-222ENST00000541204 UVSSAQ2YD98 709 aa14.93□□□□□ -0.02
RNF4-222ENST00000541204 A0A0G2JS52 829 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 TNNI3KQ59H18 835 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 SYTL4Q96C24 671 aaPredicted RBP14.92□□□□□ -0.02
RNF4-222ENST00000541204 ZNF594Q96JF6 807 aaPredicted RBP14.92□□□□□ -0.02
RNF4-222ENST00000541204 DBNDD2Q9BQY9 259 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 COPRSQ9NQ92 184 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 PDRG1Q9NUG6 133 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 FPGT-TNNI3KV9GXZ4 949 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 ADCY5O95622 1261 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 DNM1Q05193 864 aaKnown RBP14.92□□□□□ -0.02
RNF4-222ENST00000541204 NEUROD6Q96NK8 337 aa14.92□□□□□ -0.02
RNF4-222ENST00000541204 CWC25Q9NXE8 425 aaPredicted RBP14.92□□□□□ -0.02
RNF4-222ENST00000541204 CASP7P55210 303 aa14.91□□□□□ -0.02
RNF4-222ENST00000541204 SASS6Q6UVJ0 657 aa14.91□□□□□ -0.02
RNF4-222ENST00000541204 ATP6V1DQ9Y5K8 247 aa14.91□□□□□ -0.02
RNF4-222ENST00000541204 COL9A3Q14050 684 aaPredicted RBP14.91□□□□□ -0.02
RNF4-222ENST00000541204 GIMAP6Q6P9H5 292 aa14.91□□□□□ -0.02
RNF4-222ENST00000541204 LETM1O95202 739 aaPredicted RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 FOXO4P98177 505 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 NKX1-1Q15270 411 aaPredicted RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 RABL6Q3YEC7 729 aaPredicted RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 VPS53Q5VIR6 699 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 DNAJC10Q8IXB1 793 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 ZMYND15Q9H091 742 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 MTMR6Q9Y217 621 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 RBM8AQ9Y5S9 174 aaKnown RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 ABCC6O95255 1503 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 PIGBQ92521 554 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 TCEANC2Q96MN5 208 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 TTC12Q9H892 705 aaPredicted RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 CYP46A1Q9Y6A2 500 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 CCDC171Q6TFL3 1326 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 TIMM10P62072 90 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 DNTTIP2Q5QJE6 756 aaKnown RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 DDX46Q7L014 1031 aaKnown RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 ZNF589Q86UQ0 364 aaPredicted RBP14.9□□□□□ -0.02
RNF4-222ENST00000541204 ZSWIM6Q9HCJ5 1215 aa14.9□□□□□ -0.02
RNF4-222ENST00000541204 VPS37CA5D8V6 355 aaPredicted RBP14.89□□□□□ -0.03
RNF4-222ENST00000541204 H7C1W4 665 aa14.89□□□□□ -0.03
RNF4-222ENST00000541204 PLCB2Q00722 1185 aa14.89□□□□□ -0.03
RNF4-222ENST00000541204 ST3GAL1Q11201 340 aa14.89□□□□□ -0.03
RNF4-222ENST00000541204 ME3Q16798 604 aa14.89□□□□□ -0.03
RNF4-222ENST00000541204 NECAB1Q8N987 351 aa14.89□□□□□ -0.03
RNF4-222ENST00000541204 TAF6LQ9Y6J9 622 aa14.89□□□□□ -0.03
RNF4-222ENST00000541204 DYNC1I1O14576 645 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 NECTIN1Q15223 517 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 SLFNL1Q499Z3 407 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 LRRC24Q50LG9 513 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 C17orf53Q8N3J3 647 aaPredicted RBP14.88□□□□□ -0.03
RNF4-222ENST00000541204 KDM4AO75164 1064 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 ZKSCAN1P17029 563 aaPredicted RBP14.88□□□□□ -0.03
RNF4-222ENST00000541204 CREB3L3Q68CJ9 461 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 CCDC129Q6ZRS4 1044 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 ZSCAN31Q96LW9 406 aaPredicted RBP14.88□□□□□ -0.03
RNF4-222ENST00000541204 SEC62Q99442 399 aaKnown RBP14.88□□□□□ -0.03
RNF4-222ENST00000541204 FUCA2Q9BTY2 467 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 KAT6BQ8WYB5 2073 aa14.88□□□□□ -0.03
RNF4-222ENST00000541204 GLI3P10071 1580 aa14.87□□□□□ -0.03
RNF4-222ENST00000541204 PIBF1Q8WXW3 757 aa14.87□□□□□ -0.03
RNF4-222ENST00000541204 FAM89AQ96GI7 184 aa14.87□□□□□ -0.03
RNF4-222ENST00000541204 PUS3Q9BZE2 481 aaKnown RBP14.87□□□□□ -0.03
RNF4-222ENST00000541204 TM6SF1Q9BZW5 370 aa14.87□□□□□ -0.03
RNF4-222ENST00000541204 SH2B1Q9NRF2 756 aaPredicted RBP14.87□□□□□ -0.03
RNF4-222ENST00000541204 TPCN1Q9ULQ1 816 aa14.87□□□□□ -0.03
RNF4-222ENST00000541204 PARP4Q9UKK3 1724 aaKnown RBP14.87□□□□□ -0.03
RNF4-222ENST00000541204 KCPQ6ZWJ8 1503 aa14.87□□□□□ -0.03
RNF4-222ENST00000541204 AFDNP55196 1824 aaKnown RBP14.87□□□□□ -0.03
RNF4-222ENST00000541204 ARFGEF2Q9Y6D5 1785 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 HIP1O00291 1037 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 GPTP24298 496 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 NOLC1Q14978 699 aaKnown RBP eCLIP14.86□□□□□ -0.03
RNF4-222ENST00000541204 SYNE4Q8N205 404 aa14.86□□□□□ -0.03
RNF4-222ENST00000541204 KCNB2Q92953 911 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms