RNA–Protein interactions for RNA: ENST00000540763.5

DDX55-207, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 799 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-207ENST00000540763 C9orf78Q9NZ63 289 aaPredicted RBP24.54■■□□□ 1.52
DDX55-207ENST00000540763 TAF1P21675 1872 aa24.53■■□□□ 1.52
DDX55-207ENST00000540763 LRRC37AA6NMS7 1700 aa24.53■■□□□ 1.52
DDX55-207ENST00000540763 RTL9Q8NET4 1388 aa24.53■■□□□ 1.52
DDX55-207ENST00000540763 CTSWP56202 376 aa24.52■■□□□ 1.52
DDX55-207ENST00000540763 CCDC152Q4G0S7 254 aa24.52■■□□□ 1.52
DDX55-207ENST00000540763 PRPF40BQ6NWY9 871 aaKnown RBP24.52■■□□□ 1.52
DDX55-207ENST00000540763 SOGA3Q5TF21 947 aa24.51■■□□□ 1.51
DDX55-207ENST00000540763 DDX46Q7L014 1031 aaKnown RBP24.51■■□□□ 1.51
DDX55-207ENST00000540763 JARID2Q92833 1246 aaPredicted RBP24.5■■□□□ 1.51
DDX55-207ENST00000540763 MS4A1P11836 297 aa24.49■■□□□ 1.51
DDX55-207ENST00000540763 USP44Q9H0E7 712 aa24.49■■□□□ 1.51
DDX55-207ENST00000540763 WWC3Q9ULE0 1092 aa24.49■■□□□ 1.51
DDX55-207ENST00000540763 GRAPQ13588 217 aa24.48■■□□□ 1.51
DDX55-207ENST00000540763 TMC4Q7Z404 712 aa24.48■■□□□ 1.51
DDX55-207ENST00000540763 DZIP1LQ8IYY4 767 aaKnown RBP24.48■■□□□ 1.51
DDX55-207ENST00000540763 TTLL11Q8NHH1 800 aa24.48■■□□□ 1.51
DDX55-207ENST00000540763 GRAPLQ8TC17 118 aaPredicted RBP24.48■■□□□ 1.51
DDX55-207ENST00000540763 SPEF2Q9C093 1822 aa24.48■■□□□ 1.51
DDX55-207ENST00000540763 SBF1O95248 1867 aa24.47■■□□□ 1.51
DDX55-207ENST00000540763 BBOX1O75936 387 aa24.47■■□□□ 1.51
DDX55-207ENST00000540763 CSF1RP07333 972 aa24.47■■□□□ 1.51
DDX55-207ENST00000540763 NBPF7P0C2Y1 421 aaPredicted RBP24.47■■□□□ 1.51
DDX55-207ENST00000540763 FTSJ3Q8IY81 847 aaKnown RBP24.47■■□□□ 1.51
DDX55-207ENST00000540763 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.47■■□□□ 1.51
DDX55-207ENST00000540763 C7orf43Q8WVR3 580 aa24.47■■□□□ 1.51
DDX55-207ENST00000540763 HDAC5Q9UQL6 1122 aa24.47■■□□□ 1.51
DDX55-207ENST00000540763 CC2D2BQ6DHV5 1058 aa24.46■■□□□ 1.51
DDX55-207ENST00000540763 GPBP1L1Q9HC44 474 aaPredicted RBP24.46■■□□□ 1.51
DDX55-207ENST00000540763 FOXO4P98177 505 aa24.45■■□□□ 1.5
DDX55-207ENST00000540763 GRIPAP1Q4V328 841 aa24.45■■□□□ 1.5
DDX55-207ENST00000540763 CLUAP1Q96AJ1 413 aa24.45■■□□□ 1.5
DDX55-207ENST00000540763 TNNQ9UQP3 1299 aa24.45■■□□□ 1.5
DDX55-207ENST00000540763 COL4A1P02462 1669 aa24.45■■□□□ 1.5
DDX55-207ENST00000540763 SNED1Q8TER0 1413 aa24.44■■□□□ 1.5
DDX55-207ENST00000540763 PPEF1O14829 653 aaPredicted RBP24.44■■□□□ 1.5
DDX55-207ENST00000540763 CCDC88AQ3V6T2 1871 aa24.44■■□□□ 1.5
DDX55-207ENST00000540763 DICER1Q9UPY3 1922 aaKnown RBP24.43■■□□□ 1.5
DDX55-207ENST00000540763 C21orf2O43822 256 aa24.43■■□□□ 1.5
DDX55-207ENST00000540763 UBTFL1P0CB47 393 aaPredicted RBP24.43■■□□□ 1.5
DDX55-207ENST00000540763 RABL6Q3YEC7 729 aaPredicted RBP24.43■■□□□ 1.5
DDX55-207ENST00000540763 CCDC93Q567U6 631 aa24.43■■□□□ 1.5
DDX55-207ENST00000540763 TMEM57Q8N5G2 664 aa24.43■■□□□ 1.5
DDX55-207ENST00000540763 SUCLG2Q96I99 432 aa24.43■■□□□ 1.5
DDX55-207ENST00000540763 CDC5LQ99459 802 aaKnown RBP24.43■■□□□ 1.5
DDX55-207ENST00000540763 LTBP3Q9NS15 1303 aa24.42■■□□□ 1.5
DDX55-207ENST00000540763 LTBP1Q14766 1721 aa24.42■■□□□ 1.5
DDX55-207ENST00000540763 GNAI3P08754 354 aa24.42■■□□□ 1.5
DDX55-207ENST00000540763 KAZALD1Q96I82 304 aa24.42■■□□□ 1.5
DDX55-207ENST00000540763 GREM2Q9H772 168 aa24.42■■□□□ 1.5
DDX55-207ENST00000540763 ATP6V0A2Q9Y487 856 aa24.42■■□□□ 1.5
DDX55-207ENST00000540763 CELF1Q92879 486 aaKnown RBP24.41■■□□□ 1.5
DDX55-207ENST00000540763 A0A1B0GUL6 1792 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 RLBP1P12271 317 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 RPS8P62241 208 aaKnown RBP24.4■■□□□ 1.5
DDX55-207ENST00000540763 PDE3AQ14432 1141 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 EPHA10Q5JZY3 1008 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 SP8Q8IXZ3 490 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 RTKN2Q8IZC4 609 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 ZNF526Q8TF50 670 aaPredicted RBP24.4■■□□□ 1.5
DDX55-207ENST00000540763 MEIS3Q99687 375 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 TMX4Q9H1E5 349 aaPredicted RBP24.4■■□□□ 1.5
DDX55-207ENST00000540763 SEC31BQ9NQW1 1179 aa24.4■■□□□ 1.5
DDX55-207ENST00000540763 ITGA6P23229 1130 aa24.39■■□□□ 1.49
DDX55-207ENST00000540763 FAM161AQ3B820 660 aa24.39■■□□□ 1.49
DDX55-207ENST00000540763 LMBR1LQ6UX01 489 aa24.39■■□□□ 1.49
DDX55-207ENST00000540763 ARHGAP27Q6ZUM4 889 aa24.39■■□□□ 1.49
DDX55-207ENST00000540763 ANKRD18AQ8IVF6 992 aa24.39■■□□□ 1.49
DDX55-207ENST00000540763 BICC1Q9H694 974 aaKnown RBP24.39■■□□□ 1.49
DDX55-207ENST00000540763 CCDC85AQ96PX6 553 aaPredicted RBP24.38■■□□□ 1.49
DDX55-207ENST00000540763 ANKRD18BA2A2Z9 1011 aa24.37■■□□□ 1.49
DDX55-207ENST00000540763 NFKBIEO00221 500 aa24.37■■□□□ 1.49
DDX55-207ENST00000540763 IFIT5Q13325 482 aaKnown RBP24.37■■□□□ 1.49
DDX55-207ENST00000540763 ITPRIPQ8IWB1 547 aa24.37■■□□□ 1.49
DDX55-207ENST00000540763 ANKRD44Q8N8A2 993 aa24.37■■□□□ 1.49
DDX55-207ENST00000540763 ZNF219Q9P2Y4 722 aaPredicted RBP24.37■■□□□ 1.49
DDX55-207ENST00000540763 TIAM2Q8IVF5 1701 aa24.36■■□□□ 1.49
DDX55-207ENST00000540763 PANK1Q8TE04 598 aa24.36■■□□□ 1.49
DDX55-207ENST00000540763 PSMD1Q99460 953 aa24.36■■□□□ 1.49
DDX55-207ENST00000540763 TAOK3Q9H2K8 898 aa24.36■■□□□ 1.49
DDX55-207ENST00000540763 DUOX1Q9NRD9 1551 aa24.35■■□□□ 1.49
DDX55-207ENST00000540763 PLIN1O60240 522 aa24.35■■□□□ 1.49
DDX55-207ENST00000540763 IGHMBP2P38935 993 aaKnown RBP24.35■■□□□ 1.49
DDX55-207ENST00000540763 FKBP4Q02790 459 aaKnown RBP eCLIP24.35■■□□□ 1.49
DDX55-207ENST00000540763 MVPQ14764 893 aaKnown RBP24.35■■□□□ 1.49
DDX55-207ENST00000540763 CCDC57Q2TAC2 916 aa24.35■■□□□ 1.49
DDX55-207ENST00000540763 BSDC1Q9NW68 430 aaPredicted RBP24.35■■□□□ 1.49
DDX55-207ENST00000540763 CHMP3Q9Y3E7 222 aa24.35■■□□□ 1.49
DDX55-207ENST00000540763 LRRFIP2Q9Y608 721 aaKnown RBP24.34■■□□□ 1.49
DDX55-207ENST00000540763 RRP1P56182 461 aaKnown RBP24.33■■□□□ 1.49
DDX55-207ENST00000540763 OLFM4Q6UX06 510 aa24.33■■□□□ 1.49
DDX55-207ENST00000540763 CHMP4BQ9H444 224 aaKnown RBP24.33■■□□□ 1.49
DDX55-207ENST00000540763 DDX19BQ9UMR2 479 aa24.33■■□□□ 1.49
DDX55-207ENST00000540763 CEP350Q5VT06 3117 aa24.32■■□□□ 1.48
DDX55-207ENST00000540763 ZBTB7BO15156 539 aaPredicted RBP24.32■■□□□ 1.48
DDX55-207ENST00000540763 GNAI2P04899 355 aa24.32■■□□□ 1.48
DDX55-207ENST00000540763 LMNB1P20700 586 aa24.32■■□□□ 1.48
DDX55-207ENST00000540763 RASSF7Q02833 373 aa24.32■■□□□ 1.48
DDX55-207ENST00000540763 MTX1Q13505 466 aa24.32■■□□□ 1.48
DDX55-207ENST00000540763 RTFDC1Q9BY42 306 aaPredicted RBP24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 761 ms