RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 MPNDQ8N594 471 aa18.37■□□□□ 0.53
SNHG1-213ENST00000540725 GRAPLQ8TC17 118 aaPredicted RBP18.37■□□□□ 0.53
SNHG1-213ENST00000540725 HYPKQ9NX55 129 aa18.37■□□□□ 0.53
SNHG1-213ENST00000540725 ISCA1Q9BUE6 129 aa18.36■□□□□ 0.53
SNHG1-213ENST00000540725 DUOX1Q9NRD9 1551 aa18.35■□□□□ 0.53
SNHG1-213ENST00000540725 ATP5J2-PTCD1G3V325 749 aa18.35■□□□□ 0.53
SNHG1-213ENST00000540725 APAF1O14727 1248 aa18.35■□□□□ 0.53
SNHG1-213ENST00000540725 ZNF853P0CG23 659 aa18.35■□□□□ 0.53
SNHG1-213ENST00000540725 VEGFBP49765 207 aa18.35■□□□□ 0.53
SNHG1-213ENST00000540725 ZNRF3Q9ULT6 936 aa18.35■□□□□ 0.53
SNHG1-213ENST00000540725 CXCL9Q07325 125 aa18.34■□□□□ 0.53
SNHG1-213ENST00000540725 KIAA2012Q0VF49 1180 aa18.34■□□□□ 0.53
SNHG1-213ENST00000540725 USP50Q70EL3 339 aaPredicted RBP18.34■□□□□ 0.53
SNHG1-213ENST00000540725 TMC4Q7Z404 712 aa18.34■□□□□ 0.53
SNHG1-213ENST00000540725 FAM89AQ96GI7 184 aa18.34■□□□□ 0.53
SNHG1-213ENST00000540725 IFT57Q9NWB7 429 aa18.33■□□□□ 0.53
SNHG1-213ENST00000540725 GPRC5DQ9NZD1 345 aa18.33■□□□□ 0.53
SNHG1-213ENST00000540725 RASSF10A6NK89 507 aa18.32■□□□□ 0.52
SNHG1-213ENST00000540725 GNAI1P63096 354 aa18.32■□□□□ 0.52
SNHG1-213ENST00000540725 CALD1Q05682 793 aaKnown RBP18.32■□□□□ 0.52
SNHG1-213ENST00000540725 COL4A1P02462 1669 aa18.32■□□□□ 0.52
SNHG1-213ENST00000540725 GMPSP49915 693 aaPredicted RBP18.31■□□□□ 0.52
SNHG1-213ENST00000540725 TRIM28Q13263 835 aaKnown RBP18.31■□□□□ 0.52
SNHG1-213ENST00000540725 SF3B3Q15393 1217 aaKnown RBP18.31■□□□□ 0.52
SNHG1-213ENST00000540725 DEFB115Q30KQ5 88 aa18.31■□□□□ 0.52
SNHG1-213ENST00000540725 RTL5Q5HYW3 569 aaPredicted RBP18.31■□□□□ 0.52
SNHG1-213ENST00000540725 CIAPIN1Q6FI81 312 aa18.31■□□□□ 0.52
SNHG1-213ENST00000540725 ADARB2Q9NS39 739 aaKnown RBP18.31■□□□□ 0.52
SNHG1-213ENST00000540725 ELL2O00472 640 aaPredicted RBP18.3■□□□□ 0.52
SNHG1-213ENST00000540725 FOXN1O15353 648 aa18.3■□□□□ 0.52
SNHG1-213ENST00000540725 FMR1Q06787 632 aaKnown RBP eCLIP18.3■□□□□ 0.52
SNHG1-213ENST00000540725 GOLGA2Q08379 1002 aa18.3■□□□□ 0.52
SNHG1-213ENST00000540725 CELF1Q92879 486 aaKnown RBP18.3■□□□□ 0.52
SNHG1-213ENST00000540725 ABT1Q9ULW3 272 aaKnown RBP18.3■□□□□ 0.52
SNHG1-213ENST00000540725 IRS4O14654 1257 aaPredicted RBP18.3■□□□□ 0.52
SNHG1-213ENST00000540725 CAPN15O75808 1086 aa18.3■□□□□ 0.52
SNHG1-213ENST00000540725 RAD17O75943 681 aa18.3■□□□□ 0.52
SNHG1-213ENST00000540725 TNIP1Q15025 636 aa18.3■□□□□ 0.52
SNHG1-213ENST00000540725 RIC3Q7Z5B4 369 aa18.3■□□□□ 0.52
SNHG1-213ENST00000540725 PHAXQ9H814 394 aaKnown RBP18.3■□□□□ 0.52
SNHG1-213ENST00000540725 CDHR2Q9BYE9 1310 aa18.29■□□□□ 0.52
SNHG1-213ENST00000540725 AIDAQ96BJ3 306 aa18.29■□□□□ 0.52
SNHG1-213ENST00000540725 BCL2L13Q9BXK5 485 aa18.29■□□□□ 0.52
SNHG1-213ENST00000540725 YDJCA8MPS7 323 aa18.28■□□□□ 0.52
SNHG1-213ENST00000540725 TRAF5O00463 557 aa18.28■□□□□ 0.52
SNHG1-213ENST00000540725 NSFL1CQ9UNZ2 370 aaKnown RBP18.28■□□□□ 0.52
SNHG1-213ENST00000540725 THSD7BQ9C0I4 1608 aa18.27■□□□□ 0.52
SNHG1-213ENST00000540725 ZBTB38Q8NAP3 1195 aaPredicted RBP18.27■□□□□ 0.51
SNHG1-213ENST00000540725 C8orf58Q8NAV2 365 aa18.27■□□□□ 0.51
SNHG1-213ENST00000540725 MYD88Q99836 296 aa18.27■□□□□ 0.51
SNHG1-213ENST00000540725 WBP1LQ9NX94 342 aa18.27■□□□□ 0.51
SNHG1-213ENST00000540725 WDR33Q9C0J8 1336 aaKnown RBP18.27■□□□□ 0.51
SNHG1-213ENST00000540725 POLR2AP24928 1970 aaKnown RBP18.26■□□□□ 0.51
SNHG1-213ENST00000540725 CTCFP49711 727 aaPredicted RBP18.26■□□□□ 0.51
SNHG1-213ENST00000540725 WASHC4Q2M389 1173 aa18.26■□□□□ 0.51
SNHG1-213ENST00000540725 MYH3P11055 1940 aa18.25■□□□□ 0.51
SNHG1-213ENST00000540725 SCN9AQ15858 1988 aa18.25■□□□□ 0.51
SNHG1-213ENST00000540725 C6orf229H3BNL8 230 aa18.25■□□□□ 0.51
SNHG1-213ENST00000540725 RPS8P62241 208 aaKnown RBP18.25■□□□□ 0.51
SNHG1-213ENST00000540725 GPSM2P81274 684 aa18.25■□□□□ 0.51
SNHG1-213ENST00000540725 CST9Q5W186 159 aa18.25■□□□□ 0.51
SNHG1-213ENST00000540725 PRDM10Q9NQV6 1147 aa18.25■□□□□ 0.51
SNHG1-213ENST00000540725 POLLQ9UGP5 575 aa18.25■□□□□ 0.51
SNHG1-213ENST00000540725 RIMBP2O15034 1052 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 HSP90B1P14625 803 aaKnown RBP18.24■□□□□ 0.51
SNHG1-213ENST00000540725 CCDC30Q5VVM6 783 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 PAXIP1Q6ZW49 1069 aaPredicted RBP18.24■□□□□ 0.51
SNHG1-213ENST00000540725 CCDC191Q8NCU4 936 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 TRPM4Q8TD43 1214 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 CAPNS2Q96L46 248 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 CHMP4AQ9BY43 222 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 DBNDD1Q9H9R9 158 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 PGAP2Q9UHJ9 254 aa18.24■□□□□ 0.51
SNHG1-213ENST00000540725 CNOT7Q9UIV1 285 aaKnown RBP18.24■□□□□ 0.51
SNHG1-213ENST00000540725 SHTN1A0MZ66 631 aa18.23■□□□□ 0.51
SNHG1-213ENST00000540725 DDX58O95786 925 aaKnown RBP18.23■□□□□ 0.51
SNHG1-213ENST00000540725 PCCAP05165 728 aaPredicted RBP18.23■□□□□ 0.51
SNHG1-213ENST00000540725 HIRAP54198 1017 aaPredicted RBP18.23■□□□□ 0.51
SNHG1-213ENST00000540725 ZC3H15Q8WU90 426 aaKnown RBP18.23■□□□□ 0.51
SNHG1-213ENST00000540725 EYA3Q99504 573 aa18.23■□□□□ 0.51
SNHG1-213ENST00000540725 GLIS2Q9BZE0 524 aaPredicted RBP18.23■□□□□ 0.51
SNHG1-213ENST00000540725 SEC31BQ9NQW1 1179 aa18.23■□□□□ 0.51
SNHG1-213ENST00000540725 TLL2Q9Y6L7 1015 aa18.23■□□□□ 0.51
SNHG1-213ENST00000540725 H7C1D1 291 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 PSMD14O00487 310 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 ECE1P42892 770 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 MAP2K1Q02750 393 aaPredicted RBP18.22■□□□□ 0.51
SNHG1-213ENST00000540725 CCDC184Q52MB2 194 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 MICALL2Q8IY33 904 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 TSPYL6Q8N831 410 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 TBC1D16Q8TBP0 767 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 METTL22Q9BUU2 404 aaPredicted RBP18.22■□□□□ 0.51
SNHG1-213ENST00000540725 CWC25Q9NXE8 425 aaPredicted RBP18.22■□□□□ 0.51
SNHG1-213ENST00000540725 ZBTB12Q9Y330 459 aaPredicted RBP18.22■□□□□ 0.51
SNHG1-213ENST00000540725 SPEF2Q9C093 1822 aa18.22■□□□□ 0.51
SNHG1-213ENST00000540725 ECE2O60344 883 aa18.21■□□□□ 0.51
SNHG1-213ENST00000540725 CELF2O95319 508 aaKnown RBP18.21■□□□□ 0.51
SNHG1-213ENST00000540725 GRM1Q13255 1194 aa18.21■□□□□ 0.51
SNHG1-213ENST00000540725 CCDC152Q4G0S7 254 aa18.21■□□□□ 0.51
SNHG1-213ENST00000540725 CYP4F22Q6NT55 531 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms