RNA–Protein interactions for RNA: ENST00000538266.5

SNHG1-208, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 347 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-208	ENST00000538266	GPC1	P35052	558 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	SMTN	P53814	917 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	SEC13	P55735	322 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	USP17L24	Q0WX57	530 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	ZNF787	Q6DD87	383 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	PRICKLE2	Q7Z3G6	844 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	SIX5	Q8N196	739 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	TRIM47	Q96LD4	638 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	SLC4A9	Q96Q91	983 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	SLC26A8	Q96RN1	970 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	HINFP	Q9BQA5	517 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	ZNF358	Q9NW07	568 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	HRH3	Q9Y5N1	445 aa		6.1	□□□□□ -1.43
SNHG1-208	ENST00000538266	NRXN1	Q9ULB1	1477 aa		6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	ADGRF5	Q8IZF2	1346 aa		6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266		A6NJY4	79 aa		6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	SNRPB	P14678	240 aa	Known RBP	6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	GRIP2	Q9C0E4	1043 aa		6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	NOVA2	Q9UNW9	492 aa	Known RBP	6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	ALK	Q9UM73	1620 aa		6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	NRXN3	Q9Y4C0	1643 aa		6.09	□□□□□ -1.43
SNHG1-208	ENST00000538266	ADAMTS13	Q76LX8	1427 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	PRAG1	Q86YV5	1406 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	SOBP	A7XYQ1	873 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	GTF2E1	P29083	439 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	POU4F2	Q12837	409 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	ELOA	Q14241	798 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	TLR1	Q15399	786 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	FOXD4L5	Q5VV16	416 aa	Predicted RBP	6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	TMEM214	Q6NUQ4	689 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	LYSMD3	Q7Z3D4	306 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	TNS4	Q8IZW8	715 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	TSEN2	Q8NCE0	465 aa	Known RBP	6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	ARX	Q96QS3	562 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	TBX22	Q9Y458	520 aa		6.08	□□□□□ -1.44
SNHG1-208	ENST00000538266	ROCK2	O75116	1388 aa	Known RBP	6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	PIK3R4	Q99570	1358 aa		6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266		M0R2N6	131 aa		6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	CDK2AP1	O14519	115 aa		6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	RNF217	Q8TC41	542 aa		6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	FHDC1	Q9C0D6	1143 aa	Predicted RBP	6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	C14orf93	Q9H972	538 aa	Known RBP	6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	DNMT3L	Q9UJW3	386 aa		6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	KIAA1210	Q9ULL0	1709 aa		6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	NKTR	P30414	1462 aa	Known RBP	6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	TRPM1	Q7Z4N2	1603 aa		6.07	□□□□□ -1.44
SNHG1-208	ENST00000538266	MET	P08581	1390 aa		6.06	□□□□□ -1.44
SNHG1-208	ENST00000538266	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	6.06	□□□□□ -1.44
SNHG1-208	ENST00000538266	CPS1	P31327	1500 aa		6.06	□□□□□ -1.44
SNHG1-208	ENST00000538266	SETD1A	O15047	1707 aa	Known RBP	6.06	□□□□□ -1.44
SNHG1-208	ENST00000538266	LGR5	O75473	907 aa		6.06	□□□□□ -1.44
SNHG1-208	ENST00000538266	NWD1	Q149M9	1564 aa		6.06	□□□□□ -1.44
SNHG1-208	ENST00000538266	RALGAPB	Q86X10	1494 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	CHD2	O14647	1828 aa	Known RBP	6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	CSB-PGBD3	P0DP91	1061 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	RHOQ	P17081	205 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	KCNA6	P17658	529 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	PHKA2	P46019	1235 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	MTFR1	Q15390	333 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	GNAS	Q5JWF2	1037 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	TMEM132E	Q6IEE7	984 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	STK32A	Q8WU08	396 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	SCHIP1	Q9P0W5	487 aa	Predicted RBP	6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	STK26	Q9P289	416 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	ZMIZ1	Q9ULJ6	1067 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	AMOTL2	Q9Y2J4	779 aa		6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	YTHDC2	Q9H6S0	1430 aa	Known RBP	6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	XRN1	Q8IZH2	1706 aa	Known RBP	6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	LRPPRC	P42704	1394 aa	Known RBP	6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	EIF3A	Q14152	1382 aa	Known RBP	6.05	□□□□□ -1.44
SNHG1-208	ENST00000538266	ASXL1	Q8IXJ9	1541 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	SPATA31C2	B4DYI2	1134 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	NBPF8	Q3BBV2	869 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	TBCEL	Q5QJ74	424 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	TMEM164	Q5U3C3	297 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	TAS1R3	Q7RTX0	852 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	NIFK	Q9BYG3	293 aa	Known RBP	6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	CABP1	Q9NZU7	370 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	PTCH1	Q13635	1447 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	ADGRB1	O14514	1584 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	KNDC1	Q76NI1	1749 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	ATAD2	Q6PL18	1390 aa		6.04	□□□□□ -1.44
SNHG1-208	ENST00000538266	TECPR2	O15040	1411 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	PTPRU	Q92729	1446 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	EPHA4	P54764	986 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	PTS	Q03393	145 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	NBPF1	Q3BBV0	1214 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	C4orf17	Q53FE4	359 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	WDR44	Q5JSH3	913 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	NBPF10	Q6P3W6	841 aa	Known RBP	6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	SLC9A9	Q8IVB4	645 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	NBPF15	Q8N660	670 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	RHBDD1	Q8TEB9	315 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	SCG3	Q8WXD2	468 aa	Known RBP	6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	AIDA	Q96BJ3	306 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	CARD11	Q9BXL7	1154 aa		6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	6.03	□□□□□ -1.44
SNHG1-208	ENST00000538266	POGK	Q9P215	609 aa		6.03	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms