RNA–Protein interactions for RNA: ENST00000536548.5

CPSF7-216, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-216ENST00000536548 SLC4A9Q96Q91 983 aa9.41□□□□□ -0.9
CPSF7-216ENST00000536548 TSPY26PQ9H489 355 aa9.41□□□□□ -0.9
CPSF7-216ENST00000536548 SRP68Q9UHB9 627 aaKnown RBP9.41□□□□□ -0.9
CPSF7-216ENST00000536548 MYH14Q7Z406 1995 aaKnown RBP9.41□□□□□ -0.9
CPSF7-216ENST00000536548 DICER1Q9UPY3 1922 aaKnown RBP9.41□□□□□ -0.9
CPSF7-216ENST00000536548 ERC2O15083 957 aa9.4□□□□□ -0.9
CPSF7-216ENST00000536548 FYB1O15117 783 aa9.4□□□□□ -0.9
CPSF7-216ENST00000536548 PRKAR2BP31323 418 aa9.4□□□□□ -0.9
CPSF7-216ENST00000536548 RBM10P98175 930 aaKnown RBP9.4□□□□□ -0.9
CPSF7-216ENST00000536548 PRPF38BQ5VTL8 546 aaKnown RBP9.4□□□□□ -0.9
CPSF7-216ENST00000536548 SIRT2Q8IXJ6 389 aa9.4□□□□□ -0.9
CPSF7-216ENST00000536548 ANKRD44Q8N8A2 993 aa9.4□□□□□ -0.9
CPSF7-216ENST00000536548 HMMRO75330 724 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 LETM1O95202 739 aaPredicted RBP9.39□□□□□ -0.91
CPSF7-216ENST00000536548 ZNF853P0CG23 659 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 SOX10P56693 466 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 GRM1Q13255 1194 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 TWISTNBQ3B726 338 aaPredicted RBP9.39□□□□□ -0.91
CPSF7-216ENST00000536548 ERFEQ4G0M1 354 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 GPT2Q8TD30 523 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 INTS4Q96HW7 963 aaKnown RBP9.39□□□□□ -0.91
CPSF7-216ENST00000536548 C1orf115Q9H7X2 142 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 ATG3Q9NT62 314 aa9.39□□□□□ -0.91
CPSF7-216ENST00000536548 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.39□□□□□ -0.91
CPSF7-216ENST00000536548 COL5A3P25940 1745 aaPredicted RBP9.39□□□□□ -0.91
CPSF7-216ENST00000536548 RPS6KA4O75676 772 aa9.38□□□□□ -0.91
CPSF7-216ENST00000536548 TPM3P06753 285 aa9.38□□□□□ -0.91
CPSF7-216ENST00000536548 ANAPC15P60006 121 aa9.38□□□□□ -0.91
CPSF7-216ENST00000536548 RRS1Q15050 365 aaKnown RBP9.38□□□□□ -0.91
CPSF7-216ENST00000536548 UTP14CQ5TAP6 766 aaKnown RBP9.38□□□□□ -0.91
CPSF7-216ENST00000536548 LDHDQ86WU2 507 aa9.38□□□□□ -0.91
CPSF7-216ENST00000536548 MYRIPQ8NFW9 859 aa9.38□□□□□ -0.91
CPSF7-216ENST00000536548 CCDC94Q9BW85 323 aaPredicted RBP9.38□□□□□ -0.91
CPSF7-216ENST00000536548 TMOD3Q9NYL9 352 aa9.38□□□□□ -0.91
CPSF7-216ENST00000536548 ZNF219Q9P2Y4 722 aaPredicted RBP9.38□□□□□ -0.91
CPSF7-216ENST00000536548 AFDNP55196 1824 aaKnown RBP9.38□□□□□ -0.91
CPSF7-216ENST00000536548 KIF20BQ96Q89 1820 aa9.38□□□□□ -0.91
CPSF7-216ENST00000536548 DLEC1Q9Y238 1755 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 PTPRCP08575 1304 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 LTBP1Q14766 1721 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 SYCE3A1L190 88 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 POLRMTO00411 1230 aaKnown RBP9.37□□□□□ -0.91
CPSF7-216ENST00000536548 EPB41L2O43491 1005 aaKnown RBP9.37□□□□□ -0.91
CPSF7-216ENST00000536548 ADRA2BP18089 450 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 DGKZQ13574 1117 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 EAPPQ56P03 285 aaPredicted RBP9.37□□□□□ -0.91
CPSF7-216ENST00000536548 BEGAINQ9BUH8 593 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 TAF1DQ9H5J8 278 aaPredicted RBP9.37□□□□□ -0.91
CPSF7-216ENST00000536548 TMEM63CQ9P1W3 806 aa9.37□□□□□ -0.91
CPSF7-216ENST00000536548 ABT1Q9ULW3 272 aaKnown RBP9.37□□□□□ -0.91
CPSF7-216ENST00000536548 THSD7BQ9C0I4 1608 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 BRD1O95696 1058 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 SDSP20132 328 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 FMR1Q06787 632 aaKnown RBP eCLIP9.36□□□□□ -0.91
CPSF7-216ENST00000536548 CUL4AQ13619 759 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 NKX1-1Q15270 411 aaPredicted RBP9.36□□□□□ -0.91
CPSF7-216ENST00000536548 MAP1SQ66K74 1059 aaPredicted RBP9.36□□□□□ -0.91
CPSF7-216ENST00000536548 CYP4F22Q6NT55 531 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 PAXIP1Q6ZW49 1069 aaPredicted RBP9.36□□□□□ -0.91
CPSF7-216ENST00000536548 TTLL6Q8N841 843 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 GPR101Q96P66 508 aaPredicted RBP9.36□□□□□ -0.91
CPSF7-216ENST00000536548 OSBPL3Q9H4L5 887 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 MBIPQ9NS73 344 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 RBM27Q9P2N5 1060 aaKnown RBP9.36□□□□□ -0.91
CPSF7-216ENST00000536548 PRDM4Q9UKN5 801 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 CLEC11AQ9Y240 323 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 EDC4Q6P2E9 1401 aaKnown RBP9.36□□□□□ -0.91
CPSF7-216ENST00000536548 FER1L6Q2WGJ9 1857 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 KDRP35968 1356 aa9.36□□□□□ -0.91
CPSF7-216ENST00000536548 SCN4AP35499 1836 aa9.35□□□□□ -0.91
CPSF7-216ENST00000536548 TM4SF1P30408 202 aa9.35□□□□□ -0.91
CPSF7-216ENST00000536548 GTF2F1P35269 517 aaKnown RBP eCLIP9.35□□□□□ -0.915e-10■■■■■ 57.2
CPSF7-216ENST00000536548 HSP90AB2PQ58FF8 381 aa9.35□□□□□ -0.91
CPSF7-216ENST00000536548 DNTTIP2Q5QJE6 756 aaKnown RBP9.35□□□□□ -0.91
CPSF7-216ENST00000536548 RC3H1Q5TC82 1133 aaKnown RBP9.35□□□□□ -0.91
CPSF7-216ENST00000536548 ZGPATQ8N5A5 531 aaKnown RBP9.35□□□□□ -0.91
CPSF7-216ENST00000536548 PIBF1Q8WXW3 757 aa9.35□□□□□ -0.91
CPSF7-216ENST00000536548 CAPNS2Q96L46 248 aa9.35□□□□□ -0.91
CPSF7-216ENST00000536548 ZDHHC9Q9Y397 364 aa9.35□□□□□ -0.91
CPSF7-216ENST00000536548 CNTNAP4Q9C0A0 1308 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 USP42Q9H9J4 1324 aaKnown RBP9.34□□□□□ -0.91
CPSF7-216ENST00000536548 CENPFP49454 3210 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 BRCA2P51587 3418 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 C21orf2O43822 256 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 AOC2O75106 756 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 CEP85Q6P2H3 762 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 CNTROBQ8N137 903 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 IL17RAQ96F46 866 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 TMX3Q96JJ7 454 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 GTPBP4Q9BZE4 634 aaKnown RBP9.34□□□□□ -0.91
CPSF7-216ENST00000536548 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.34□□□□□ -0.91
CPSF7-216ENST00000536548 ADAMTSL1Q8N6G6 1762 aa9.34□□□□□ -0.91
CPSF7-216ENST00000536548 COL6A3P12111 3177 aa9.33□□□□□ -0.92
CPSF7-216ENST00000536548 IQCA1LA6NCM1 817 aa9.33□□□□□ -0.92
CPSF7-216ENST00000536548 NEK4P51957 841 aa9.33□□□□□ -0.92
CPSF7-216ENST00000536548 CHAF1AQ13111 956 aaPredicted RBP9.33□□□□□ -0.92
CPSF7-216ENST00000536548 PKP1Q13835 747 aa9.33□□□□□ -0.92
CPSF7-216ENST00000536548 CCDC183Q5T5S1 534 aa9.33□□□□□ -0.92
CPSF7-216ENST00000536548 C2CD5Q86YS7 1000 aa9.33□□□□□ -0.92
CPSF7-216ENST00000536548 TSPYL6Q8N831 410 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms