RNA–Protein interactions for RNA: ENST00000536548.5

CPSF7-216, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-216ENST00000536548 NISCHQ9Y2I1 1504 aa17.21■□□□□ 0.35
CPSF7-216ENST00000536548 ABCC9O60706 1549 aa16.46■□□□□ 0.23
CPSF7-216ENST00000536548 DNAJC5BQ9UF47 199 aa16.11■□□□□ 0.17
CPSF7-216ENST00000536548 CCDC180Q9P1Z9 1646 aa15.69■□□□□ 0.1
CPSF7-216ENST00000536548 RB1CC1Q8TDY2 1594 aa15.28■□□□□ 0.04
CPSF7-216ENST00000536548 PABPN1Q86U42 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
CPSF7-216ENST00000536548 DNAJC5Q9H3Z4 198 aa15.2■□□□□ 0.02
CPSF7-216ENST00000536548 UNC13AQ9UPW8 1703 aa15.04■□□□□ -0
CPSF7-216ENST00000536548 NACADO15069 1562 aa14.99□□□□□ -0.01
CPSF7-216ENST00000536548 BICRAQ9NZM4 1560 aa14.94□□□□□ -0.02
CPSF7-216ENST00000536548 DCAF8L2P0C7V8 631 aa14.93□□□□□ -0.02
CPSF7-216ENST00000536548 CECR2Q9BXF3 1484 aa14.86□□□□□ -0.03
CPSF7-216ENST00000536548 CC2D2AQ9P2K1 1620 aa14.81□□□□□ -0.04
CPSF7-216ENST00000536548 EIF4G1Q04637 1599 aaKnown RBP14.6□□□□□ -0.07
CPSF7-216ENST00000536548 MYO15BQ96JP2 1530 aa14.51□□□□□ -0.09
CPSF7-216ENST00000536548 SHROOM4Q9ULL8 1493 aa14.49□□□□□ -0.09
CPSF7-216ENST00000536548 CUX2O14529 1486 aa14.36□□□□□ -0.11
CPSF7-216ENST00000536548 SCRIBQ14160 1630 aa14.35□□□□□ -0.11
CPSF7-216ENST00000536548 TRIM41Q8WV44 630 aa14.32□□□□□ -0.12
CPSF7-216ENST00000536548 ERCC6Q03468 1493 aa14.21□□□□□ -0.13
CPSF7-216ENST00000536548 ZCCHC6Q5VYS8 1495 aaKnown RBP14.11□□□□□ -0.15
CPSF7-216ENST00000536548 DCAF1Q9Y4B6 1507 aa14.1□□□□□ -0.15
CPSF7-216ENST00000536548 NESP48681 1621 aa13.97□□□□□ -0.17
CPSF7-216ENST00000536548 THOC2Q8NI27 1593 aaKnown RBP13.9□□□□□ -0.18
CPSF7-216ENST00000536548 NCAPD3P42695 1498 aa13.87□□□□□ -0.19
CPSF7-216ENST00000536548 SMARCA2P51531 1590 aa13.79□□□□□ -0.2
CPSF7-216ENST00000536548 ATAD2BQ9ULI0 1458 aa13.76□□□□□ -0.21
CPSF7-216ENST00000536548 KIF21AQ7Z4S6 1674 aa13.75□□□□□ -0.21
CPSF7-216ENST00000536548 HMGXB3Q12766 1538 aa13.69□□□□□ -0.22
CPSF7-216ENST00000536548 BAZ1AQ9NRL2 1556 aaPredicted RBP13.68□□□□□ -0.22
CPSF7-216ENST00000536548 LAMC3Q9Y6N6 1575 aa13.66□□□□□ -0.22
CPSF7-216ENST00000536548 OSCARQ8IYS5 282 aa13.64□□□□□ -0.23
CPSF7-216ENST00000536548 PDS5BQ9NTI5 1447 aa13.6□□□□□ -0.23
CPSF7-216ENST00000536548 SMARCA4P51532 1647 aa13.58□□□□□ -0.24
CPSF7-216ENST00000536548 BAZ1BQ9UIG0 1483 aaKnown RBP13.58□□□□□ -0.24
CPSF7-216ENST00000536548 RIMBP3CA6NJZ7 1639 aa13.57□□□□□ -0.24
CPSF7-216ENST00000536548 RIMBP3BA6NNM3 1639 aa13.57□□□□□ -0.24
CPSF7-216ENST00000536548 RIMBP3Q9UFD9 1639 aa13.57□□□□□ -0.24
CPSF7-216ENST00000536548 AEBP2Q6ZN18 517 aaPredicted RBP13.56□□□□□ -0.24
CPSF7-216ENST00000536548 MRC2Q9UBG0 1479 aa13.54□□□□□ -0.24
CPSF7-216ENST00000536548 WDR62O43379 1518 aa13.53□□□□□ -0.24
CPSF7-216ENST00000536548 TRHP20396 242 aaPredicted RBP13.5□□□□□ -0.25
CPSF7-216ENST00000536548 ARHGEF11O15085 1522 aa13.44□□□□□ -0.26
CPSF7-216ENST00000536548 CYB5RLQ6IPT4 315 aa13.44□□□□□ -0.26
CPSF7-216ENST00000536548 CADPSQ9ULU8 1353 aa13.43□□□□□ -0.26
CPSF7-216ENST00000536548 PEG3Q9GZU2 1588 aa13.41□□□□□ -0.26
CPSF7-216ENST00000536548 CEP164Q9UPV0 1460 aa13.36□□□□□ -0.27
CPSF7-216ENST00000536548 MROH2BQ7Z745 1585 aa13.3□□□□□ -0.28
CPSF7-216ENST00000536548 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
CPSF7-216ENST00000536548 ARAP1Q96P48 1450 aa13.27□□□□□ -0.29
CPSF7-216ENST00000536548 URB2Q14146 1524 aaKnown RBP13.25□□□□□ -0.29
CPSF7-216ENST00000536548 ZNF608Q9ULD9 1512 aaPredicted RBP13.23□□□□□ -0.29
CPSF7-216ENST00000536548 ILDR1Q86SU0 546 aaPredicted RBP13.16□□□□□ -0.3
CPSF7-216ENST00000536548 CHD1O14646 1710 aa13.14□□□□□ -0.31
CPSF7-216ENST00000536548 WIZO95785 1651 aa13.14□□□□□ -0.31
CPSF7-216ENST00000536548 CFTRP13569 1480 aa13.13□□□□□ -0.31
CPSF7-216ENST00000536548 IFT140Q96RY7 1462 aa13.09□□□□□ -0.31
CPSF7-216ENST00000536548 EIF4G3O43432 1585 aaKnown RBP13.08□□□□□ -0.32
CPSF7-216ENST00000536548 FBLN2P98095 1184 aa13.08□□□□□ -0.32
CPSF7-216ENST00000536548 RSF1Q96T23 1441 aaPredicted RBP13.07□□□□□ -0.32
CPSF7-216ENST00000536548 AQRO60306 1485 aaKnown RBP eCLIP13.02□□□□□ -0.333e-7■■■■■ 40.5
CPSF7-216ENST00000536548 TOPBP1Q92547 1522 aa12.97□□□□□ -0.33
CPSF7-216ENST00000536548 PRDM2Q13029 1718 aa12.95□□□□□ -0.34
CPSF7-216ENST00000536548 CLASP1Q7Z460 1538 aa12.93□□□□□ -0.34
CPSF7-216ENST00000536548 TARBP1Q13395 1621 aaKnown RBP12.92□□□□□ -0.34
CPSF7-216ENST00000536548 GAPVD1Q14C86 1478 aa12.86□□□□□ -0.35
CPSF7-216ENST00000536548 KDM4FA0A1W2PPD8 638 aa12.85□□□□□ -0.35
CPSF7-216ENST00000536548 HRCP23327 699 aa12.85□□□□□ -0.35
CPSF7-216ENST00000536548 DNMBPQ6XZF7 1577 aa12.84□□□□□ -0.35
CPSF7-216ENST00000536548 TOP2AP11388 1531 aaKnown RBP12.83□□□□□ -0.35
CPSF7-216ENST00000536548 TDRD9Q8NDG6 1382 aaKnown RBP12.83□□□□□ -0.36
CPSF7-216ENST00000536548 SYNJ1O43426 1573 aa12.83□□□□□ -0.36
CPSF7-216ENST00000536548 SNAPC4Q5SXM2 1469 aa12.83□□□□□ -0.36
CPSF7-216ENST00000536548 ABCC8Q09428 1581 aa12.82□□□□□ -0.36
CPSF7-216ENST00000536548 CHMP7Q8WUX9 453 aaPredicted RBP12.82□□□□□ -0.36
CPSF7-216ENST00000536548 RAD54L2Q9Y4B4 1467 aa12.81□□□□□ -0.36
CPSF7-216ENST00000536548 POLA1P09884 1462 aaPredicted RBP12.8□□□□□ -0.36
CPSF7-216ENST00000536548 KIF13AQ9H1H9 1805 aa12.8□□□□□ -0.36
CPSF7-216ENST00000536548 SUPT5HO00267 1087 aaKnown RBP12.78□□□□□ -0.36
CPSF7-216ENST00000536548 ERCC6L2Q5T890 1561 aa12.77□□□□□ -0.37
CPSF7-216ENST00000536548 CCDC88BA6NC98 1476 aa12.75□□□□□ -0.37
CPSF7-216ENST00000536548 SOGA1O94964 1423 aa12.73□□□□□ -0.37
CPSF7-216ENST00000536548 SYNJ2O15056 1496 aa12.71□□□□□ -0.38
CPSF7-216ENST00000536548 MAGI1Q96QZ7 1491 aaPredicted RBP12.71□□□□□ -0.38
CPSF7-216ENST00000536548 GRIN2BQ13224 1484 aa12.66□□□□□ -0.38
CPSF7-216ENST00000536548 CHIC1Q5VXU3 224 aa12.65□□□□□ -0.38
CPSF7-216ENST00000536548 WDR97A6NE52 1622 aa12.63□□□□□ -0.39
CPSF7-216ENST00000536548 FAM69CQ0P6D2 419 aa12.63□□□□□ -0.39
CPSF7-216ENST00000536548 FGD5Q6ZNL6 1462 aa12.63□□□□□ -0.39
CPSF7-216ENST00000536548 PBRM1Q86U86 1689 aa12.61□□□□□ -0.39
CPSF7-216ENST00000536548 KDM6BO15054 1643 aa12.61□□□□□ -0.39
CPSF7-216ENST00000536548 CEP170Q5SW79 1584 aa12.6□□□□□ -0.39
CPSF7-216ENST00000536548 HECW2Q9P2P5 1572 aa12.6□□□□□ -0.39
CPSF7-216ENST00000536548 ABCC10Q5T3U5 1492 aa12.58□□□□□ -0.4
CPSF7-216ENST00000536548 TSPOAP1O95153 1857 aa12.57□□□□□ -0.4
CPSF7-216ENST00000536548 DIP2BQ9P265 1576 aa12.54□□□□□ -0.4
CPSF7-216ENST00000536548 ADGRL1O94910 1474 aa12.53□□□□□ -0.4
CPSF7-216ENST00000536548 GRIN2AQ12879 1464 aa12.53□□□□□ -0.4
CPSF7-216ENST00000536548 CUX1P39880 1505 aa12.52□□□□□ -0.4
CPSF7-216ENST00000536548 SHROOM2Q13796 1616 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms