RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 LTBP3Q9NS15 1303 aa28.8■■■□□ 2.2
SFSWAP-204ENST00000535399 BCAR3O75815 825 aa28.8■■■□□ 2.2
SFSWAP-204ENST00000535399 BBOX1O75936 387 aa28.8■■■□□ 2.2
SFSWAP-204ENST00000535399 C9orf131Q5VYM1 1079 aa28.8■■■□□ 2.2
SFSWAP-204ENST00000535399 KIF16BQ96L93 1317 aa28.79■■■□□ 2.2
SFSWAP-204ENST00000535399 GRM8O00222 908 aa28.79■■■□□ 2.2
SFSWAP-204ENST00000535399 CCDC152Q4G0S7 254 aa28.79■■■□□ 2.2
SFSWAP-204ENST00000535399 CC2D2BQ6DHV5 1058 aa28.79■■■□□ 2.2
SFSWAP-204ENST00000535399 ATP6V0A2Q9Y487 856 aa28.79■■■□□ 2.2
SFSWAP-204ENST00000535399 CACNA1SQ13698 1873 aa28.78■■■□□ 2.2
SFSWAP-204ENST00000535399 RTKN2Q8IZC4 609 aa28.78■■■□□ 2.2
SFSWAP-204ENST00000535399 TTLL11Q8NHH1 800 aa28.78■■■□□ 2.2
SFSWAP-204ENST00000535399 CELF1Q92879 486 aaKnown RBP28.78■■■□□ 2.2
SFSWAP-204ENST00000535399 API5Q9BZZ5 524 aaKnown RBP28.78■■■□□ 2.2
SFSWAP-204ENST00000535399 TAOK3Q9H2K8 898 aa28.78■■■□□ 2.2
SFSWAP-204ENST00000535399 SEC31BQ9NQW1 1179 aa28.78■■■□□ 2.2
SFSWAP-204ENST00000535399 LMNB1P20700 586 aa28.77■■■□□ 2.2
SFSWAP-204ENST00000535399 ARHGAP45Q92619 1136 aa28.77■■■□□ 2.2
SFSWAP-204ENST00000535399 CCDC85AQ96PX6 553 aaPredicted RBP28.77■■■□□ 2.2
SFSWAP-204ENST00000535399 RNF181Q9P0P0 153 aa28.77■■■□□ 2.2
SFSWAP-204ENST00000535399 FKBP4Q02790 459 aaKnown RBP eCLIP28.76■■■□□ 2.19
SFSWAP-204ENST00000535399 SP8Q8IXZ3 490 aa28.75■■■□□ 2.19
SFSWAP-204ENST00000535399 C9orf78Q9NZ63 289 aaPredicted RBP28.75■■■□□ 2.19
SFSWAP-204ENST00000535399 FER1L6Q2WGJ9 1857 aa28.74■■■□□ 2.19
SFSWAP-204ENST00000535399 COL4A1P02462 1669 aa28.74■■■□□ 2.19
SFSWAP-204ENST00000535399 TMC4Q7Z404 712 aa28.74■■■□□ 2.19
SFSWAP-204ENST00000535399 UTYO14607 1347 aa28.73■■■□□ 2.19
SFSWAP-204ENST00000535399 CSF1RP07333 972 aa28.73■■■□□ 2.19
SFSWAP-204ENST00000535399 RPS8P62241 208 aaKnown RBP28.73■■■□□ 2.19
SFSWAP-204ENST00000535399 GRIPAP1Q4V328 841 aa28.73■■■□□ 2.19
SFSWAP-204ENST00000535399 GREM2Q9H772 168 aa28.73■■■□□ 2.19
SFSWAP-204ENST00000535399 RTL9Q8NET4 1388 aa28.73■■■□□ 2.19
SFSWAP-204ENST00000535399 FOXO4P98177 505 aa28.72■■■□□ 2.19
SFSWAP-204ENST00000535399 ZNF784Q8NCA9 323 aaPredicted RBP28.72■■■□□ 2.19
SFSWAP-204ENST00000535399 PSMD1Q99460 953 aa28.72■■■□□ 2.19
SFSWAP-204ENST00000535399 IPO8O15397 1037 aaKnown RBP28.71■■■□□ 2.19
SFSWAP-204ENST00000535399 NBPF7P0C2Y1 421 aaPredicted RBP28.71■■■□□ 2.19
SFSWAP-204ENST00000535399 CCT4P50991 539 aaKnown RBP28.71■■■□□ 2.19
SFSWAP-204ENST00000535399 EPHA10Q5JZY3 1008 aa28.71■■■□□ 2.19
SFSWAP-204ENST00000535399 USP44Q9H0E7 712 aa28.7■■■□□ 2.18
SFSWAP-204ENST00000535399 TMX4Q9H1E5 349 aaPredicted RBP28.7■■■□□ 2.18
SFSWAP-204ENST00000535399 ZNF277Q9NRM2 450 aaPredicted RBP28.7■■■□□ 2.18
SFSWAP-204ENST00000535399 TRIM27P14373 513 aa28.69■■■□□ 2.18
SFSWAP-204ENST00000535399 ATF7IPQ6VMQ6 1270 aa28.69■■■□□ 2.18
SFSWAP-204ENST00000535399 FRAT1Q92837 279 aaPredicted RBP28.69■■■□□ 2.18
SFSWAP-204ENST00000535399 SUCLG2Q96I99 432 aa28.69■■■□□ 2.18
SFSWAP-204ENST00000535399 SBF1O95248 1867 aa28.68■■■□□ 2.18
SFSWAP-204ENST00000535399 TAF1P21675 1872 aa28.68■■■□□ 2.18
SFSWAP-204ENST00000535399 FAM161AQ3B820 660 aa28.68■■■□□ 2.18
SFSWAP-204ENST00000535399 KAZALD1Q96I82 304 aa28.68■■■□□ 2.18
SFSWAP-204ENST00000535399 CDC5LQ99459 802 aaKnown RBP28.68■■■□□ 2.18
SFSWAP-204ENST00000535399 TNNQ9UQP3 1299 aa28.68■■■□□ 2.18
SFSWAP-204ENST00000535399 ANKRD18AQ8IVF6 992 aa28.67■■■□□ 2.18
SFSWAP-204ENST00000535399 ITGA6P23229 1130 aa28.66■■■□□ 2.18
SFSWAP-204ENST00000535399 MPNDQ8N594 471 aa28.66■■■□□ 2.18
SFSWAP-204ENST00000535399 RTFDC1Q9BY42 306 aaPredicted RBP28.66■■■□□ 2.18
SFSWAP-204ENST00000535399 ZC3H4Q9UPT8 1303 aaKnown RBP28.66■■■□□ 2.18
SFSWAP-204ENST00000535399 IARSP41252 1262 aaKnown RBP28.65■■■□□ 2.18
SFSWAP-204ENST00000535399 ZKSCAN2Q63HK3 967 aa28.65■■■□□ 2.18
SFSWAP-204ENST00000535399 INTS3Q68E01 1043 aaKnown RBP28.65■■■□□ 2.18
SFSWAP-204ENST00000535399 LMBR1LQ6UX01 489 aa28.65■■■□□ 2.18
SFSWAP-204ENST00000535399 DPP8Q6V1X1 898 aaPredicted RBP28.65■■■□□ 2.18
SFSWAP-204ENST00000535399 YTHDC1Q96MU7 727 aaKnown RBP28.64■■■□□ 2.18
SFSWAP-204ENST00000535399 GPSM2P81274 684 aa28.63■■■□□ 2.17
SFSWAP-204ENST00000535399 BSDC1Q9NW68 430 aaPredicted RBP28.62■■■□□ 2.17
SFSWAP-204ENST00000535399 MYH3P11055 1940 aa28.62■■■□□ 2.17
SFSWAP-204ENST00000535399 LRRC37AA6NMS7 1700 aa28.62■■■□□ 2.17
SFSWAP-204ENST00000535399 RABL6Q3YEC7 729 aaPredicted RBP28.61■■■□□ 2.17
SFSWAP-204ENST00000535399 SUPT20HQ8NEM7 779 aa28.61■■■□□ 2.17
SFSWAP-204ENST00000535399 CLUAP1Q96AJ1 413 aa28.61■■■□□ 2.17
SFSWAP-204ENST00000535399 BICC1Q9H694 974 aaKnown RBP28.61■■■□□ 2.17
SFSWAP-204ENST00000535399 CHMP3Q9Y3E7 222 aa28.61■■■□□ 2.17
SFSWAP-204ENST00000535399 ANKRD18BA2A2Z9 1011 aa28.6■■■□□ 2.17
SFSWAP-204ENST00000535399 IFIT5Q13325 482 aaKnown RBP28.6■■■□□ 2.17
SFSWAP-204ENST00000535399 ANKRD44Q8N8A2 993 aa28.6■■■□□ 2.17
SFSWAP-204ENST00000535399 ZNF526Q8TF50 670 aaPredicted RBP28.6■■■□□ 2.17
SFSWAP-204ENST00000535399 NSFL1CQ9UNZ2 370 aaKnown RBP28.6■■■□□ 2.17
SFSWAP-204ENST00000535399 IGHMBP2P38935 993 aaKnown RBP28.59■■■□□ 2.17
SFSWAP-204ENST00000535399 VPS33BQ9H267 617 aa28.59■■■□□ 2.17
SFSWAP-204ENST00000535399 PODXL2Q9NZ53 605 aa28.59■■■□□ 2.17
SFSWAP-204ENST00000535399 RCAN3Q9UKA8 241 aa28.59■■■□□ 2.17
SFSWAP-204ENST00000535399 DUOX1Q9NRD9 1551 aa28.58■■■□□ 2.17
SFSWAP-204ENST00000535399 POLLQ9UGP5 575 aa28.58■■■□□ 2.17
SFSWAP-204ENST00000535399 MINPP1Q9UNW1 487 aa28.58■■■□□ 2.17
SFSWAP-204ENST00000535399 PPIP5K2O43314 1243 aa28.57■■■□□ 2.16
SFSWAP-204ENST00000535399 AOC3Q16853 763 aa28.57■■■□□ 2.16
SFSWAP-204ENST00000535399 LARGE2Q8N3Y3 721 aa28.57■■■□□ 2.16
SFSWAP-204ENST00000535399 MEIS3Q99687 375 aa28.57■■■□□ 2.16
SFSWAP-204ENST00000535399 COL4A5P29400 1685 aa28.57■■■□□ 2.16
SFSWAP-204ENST00000535399 UBTFL1P0CB47 393 aaPredicted RBP28.56■■■□□ 2.16
SFSWAP-204ENST00000535399 CCDC57Q2TAC2 916 aa28.56■■■□□ 2.16
SFSWAP-204ENST00000535399 CCDC88AQ3V6T2 1871 aa28.56■■■□□ 2.16
SFSWAP-204ENST00000535399 TMEM57Q8N5G2 664 aa28.56■■■□□ 2.16
SFSWAP-204ENST00000535399 TBC1D16Q8TBP0 767 aa28.56■■■□□ 2.16
SFSWAP-204ENST00000535399 GPBP1L1Q9HC44 474 aaPredicted RBP28.56■■■□□ 2.16
SFSWAP-204ENST00000535399 GLTPD2A6NH11 291 aa28.55■■■□□ 2.16
SFSWAP-204ENST00000535399 KIAA2012Q0VF49 1180 aa28.55■■■□□ 2.16
SFSWAP-204ENST00000535399 MPHOSPH8Q99549 860 aa28.55■■■□□ 2.16
SFSWAP-204ENST00000535399 ANKIB1Q9P2G1 1089 aa28.55■■■□□ 2.16
SFSWAP-204ENST00000535399 DICER1Q9UPY3 1922 aaKnown RBP28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms