RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 C7orf43Q8WVR3 580 aa18.28■□□□□ 0.52
CPSF1-206ENST00000531480 JARID2Q92833 1246 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-206ENST00000531480 COL4A1P02462 1669 aa18.28■□□□□ 0.52
CPSF1-206ENST00000531480 FER1L6Q2WGJ9 1857 aa18.27■□□□□ 0.52
CPSF1-206ENST00000531480 LRRC37AA6NMS7 1700 aa18.27■□□□□ 0.52
CPSF1-206ENST00000531480 SNED1Q8TER0 1413 aa18.27■□□□□ 0.52
CPSF1-206ENST00000531480 CSF1RP07333 972 aa18.27■□□□□ 0.52
CPSF1-206ENST00000531480 CTSWP56202 376 aa18.27■□□□□ 0.52
CPSF1-206ENST00000531480 TTLL11Q8NHH1 800 aa18.27■□□□□ 0.52
CPSF1-206ENST00000531480 RBM17Q96I25 401 aaKnown RBP18.27■□□□□ 0.52
CPSF1-206ENST00000531480 KAZALD1Q96I82 304 aa18.27■□□□□ 0.52
CPSF1-206ENST00000531480 C9orf78Q9NZ63 289 aaPredicted RBP18.27■□□□□ 0.52
CPSF1-206ENST00000531480 RLBP1P12271 317 aa18.26■□□□□ 0.51
CPSF1-206ENST00000531480 FOXO4P98177 505 aa18.26■□□□□ 0.51
CPSF1-206ENST00000531480 PRPF40BQ6NWY9 871 aaKnown RBP18.26■□□□□ 0.51
CPSF1-206ENST00000531480 RPGRQ92834 1020 aaKnown RBP18.26■□□□□ 0.51
CPSF1-206ENST00000531480 ZNF622Q969S3 477 aaKnown RBP eCLIP18.26■□□□□ 0.51
CPSF1-206ENST00000531480 DZIP1LQ8IYY4 767 aaKnown RBP18.25■□□□□ 0.51
CPSF1-206ENST00000531480 BCS1LQ9Y276 419 aa18.25■□□□□ 0.51
CPSF1-206ENST00000531480 RABL6Q3YEC7 729 aaPredicted RBP18.24■□□□□ 0.51
CPSF1-206ENST00000531480 CCDC152Q4G0S7 254 aa18.24■□□□□ 0.51
CPSF1-206ENST00000531480 TMEM57Q8N5G2 664 aa18.24■□□□□ 0.51
CPSF1-206ENST00000531480 CLUAP1Q96AJ1 413 aa18.24■□□□□ 0.51
CPSF1-206ENST00000531480 GRIN3BO60391 1043 aa18.23■□□□□ 0.51
CPSF1-206ENST00000531480 BBOX1O75936 387 aa18.23■□□□□ 0.51
CPSF1-206ENST00000531480 MS4A1P11836 297 aa18.23■□□□□ 0.51
CPSF1-206ENST00000531480 GRAPQ13588 217 aa18.23■□□□□ 0.51
CPSF1-206ENST00000531480 EPHA10Q5JZY3 1008 aa18.23■□□□□ 0.51
CPSF1-206ENST00000531480 DDX46Q7L014 1031 aaKnown RBP18.23■□□□□ 0.51
CPSF1-206ENST00000531480 GRAPLQ8TC17 118 aaPredicted RBP18.23■□□□□ 0.51
CPSF1-206ENST00000531480 SUCLG2Q96I99 432 aa18.23■□□□□ 0.51
CPSF1-206ENST00000531480 PDE3AQ14432 1141 aa18.22■□□□□ 0.51
CPSF1-206ENST00000531480 TMC4Q7Z404 712 aa18.22■□□□□ 0.51
CPSF1-206ENST00000531480 LTBP1Q14766 1721 aa18.22■□□□□ 0.51
CPSF1-206ENST00000531480 SBF1O95248 1867 aa18.22■□□□□ 0.51
CPSF1-206ENST00000531480 SOGA3Q5TF21 947 aa18.21■□□□□ 0.51
CPSF1-206ENST00000531480 FTSJ3Q8IY81 847 aaKnown RBP18.21■□□□□ 0.51
CPSF1-206ENST00000531480 ANKRD44Q8N8A2 993 aa18.21■□□□□ 0.51
CPSF1-206ENST00000531480 MEIS3Q99687 375 aa18.21■□□□□ 0.51
CPSF1-206ENST00000531480 GREM2Q9H772 168 aa18.21■□□□□ 0.51
CPSF1-206ENST00000531480 PLIN1O60240 522 aa18.2■□□□□ 0.5
CPSF1-206ENST00000531480 GNAI3P08754 354 aa18.2■□□□□ 0.5
CPSF1-206ENST00000531480 CC2D2BQ6DHV5 1058 aa18.2■□□□□ 0.5
CPSF1-206ENST00000531480 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.2■□□□□ 0.5
CPSF1-206ENST00000531480 CELF1Q92879 486 aaKnown RBP18.2■□□□□ 0.5
CPSF1-206ENST00000531480 SEC31BQ9NQW1 1179 aa18.2■□□□□ 0.5
CPSF1-206ENST00000531480 ATP6V0A2Q9Y487 856 aa18.2■□□□□ 0.5
CPSF1-206ENST00000531480 PPEF1O14829 653 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-206ENST00000531480 C21orf2O43822 256 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 UBTFL1P0CB47 393 aaPredicted RBP18.19■□□□□ 0.5
CPSF1-206ENST00000531480 RPS8P62241 208 aaKnown RBP18.19■□□□□ 0.5
CPSF1-206ENST00000531480 GRIPAP1Q4V328 841 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 LMBR1LQ6UX01 489 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 SP8Q8IXZ3 490 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 PANK1Q8TE04 598 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 BICC1Q9H694 974 aaKnown RBP18.19■□□□□ 0.5
CPSF1-206ENST00000531480 HDAC5Q9UQL6 1122 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 LTBP3Q9NS15 1303 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 SPEF2Q9C093 1822 aa18.19■□□□□ 0.5
CPSF1-206ENST00000531480 ZBTB7BO15156 539 aaPredicted RBP18.18■□□□□ 0.5
CPSF1-206ENST00000531480 FAM161AQ3B820 660 aa18.18■□□□□ 0.5
CPSF1-206ENST00000531480 ITGA6P23229 1130 aa18.17■□□□□ 0.5
CPSF1-206ENST00000531480 RRP1P56182 461 aaKnown RBP18.17■□□□□ 0.5
CPSF1-206ENST00000531480 MVPQ14764 893 aaKnown RBP18.17■□□□□ 0.5
CPSF1-206ENST00000531480 CCDC93Q567U6 631 aa18.17■□□□□ 0.5
CPSF1-206ENST00000531480 CDC5LQ99459 802 aaKnown RBP18.17■□□□□ 0.5
CPSF1-206ENST00000531480 DICER1Q9UPY3 1922 aaKnown RBP18.17■□□□□ 0.5
CPSF1-206ENST00000531480 A0A1B0GUL6 1792 aa18.17■□□□□ 0.5
CPSF1-206ENST00000531480 CCDC88AQ3V6T2 1871 aa18.16■□□□□ 0.5
CPSF1-206ENST00000531480 NFKBIEO00221 500 aa18.16■□□□□ 0.5
CPSF1-206ENST00000531480 MTX1Q13505 466 aa18.16■□□□□ 0.5
CPSF1-206ENST00000531480 C20orf194Q5TEA3 1177 aa18.16■□□□□ 0.5
CPSF1-206ENST00000531480 OLFM4Q6UX06 510 aa18.16■□□□□ 0.5
CPSF1-206ENST00000531480 RTKN2Q8IZC4 609 aa18.16■□□□□ 0.5
CPSF1-206ENST00000531480 CCDC85AQ96PX6 553 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-206ENST00000531480 BSDC1Q9NW68 430 aaPredicted RBP18.16■□□□□ 0.5
CPSF1-206ENST00000531480 DUOX1Q9NRD9 1551 aa18.16■□□□□ 0.5
CPSF1-206ENST00000531480 SLC51AQ86UW1 340 aa18.15■□□□□ 0.5
CPSF1-206ENST00000531480 ANKRD18AQ8IVF6 992 aa18.15■□□□□ 0.5
CPSF1-206ENST00000531480 ITPRIPQ8IWB1 547 aa18.15■□□□□ 0.5
CPSF1-206ENST00000531480 PSMD1Q99460 953 aa18.15■□□□□ 0.5
CPSF1-206ENST00000531480 RTFDC1Q9BY42 306 aaPredicted RBP18.15■□□□□ 0.5
CPSF1-206ENST00000531480 LRRFIP2Q9Y608 721 aaKnown RBP18.15■□□□□ 0.5
CPSF1-206ENST00000531480 ANKRD18BA2A2Z9 1011 aa18.14■□□□□ 0.49
CPSF1-206ENST00000531480 IFIT5Q13325 482 aaKnown RBP18.14■□□□□ 0.49
CPSF1-206ENST00000531480 DDX19BQ9UMR2 479 aa18.14■□□□□ 0.49
CPSF1-206ENST00000531480 GNAI2P04899 355 aa18.13■□□□□ 0.49
CPSF1-206ENST00000531480 RFX5P48382 616 aaPredicted RBP18.13■□□□□ 0.49
CPSF1-206ENST00000531480 PRELPP51888 382 aa18.13■□□□□ 0.49
CPSF1-206ENST00000531480 ARHGAP27Q6ZUM4 889 aa18.13■□□□□ 0.49
CPSF1-206ENST00000531480 ZNF526Q8TF50 670 aaPredicted RBP18.13■□□□□ 0.49
CPSF1-206ENST00000531480 PODXL2Q9NZ53 605 aa18.13■□□□□ 0.49
CPSF1-206ENST00000531480 FKBP4Q02790 459 aaKnown RBP eCLIP18.12■□□□□ 0.49
CPSF1-206ENST00000531480 CCDC57Q2TAC2 916 aa18.12■□□□□ 0.49
CPSF1-206ENST00000531480 TAOK3Q9H2K8 898 aa18.12■□□□□ 0.49
CPSF1-206ENST00000531480 ZBTB40Q9NUA8 1239 aa18.12■□□□□ 0.49
CPSF1-206ENST00000531480 ZNF219Q9P2Y4 722 aaPredicted RBP18.12■□□□□ 0.49
CPSF1-206ENST00000531480 COG6Q9Y2V7 657 aa18.12■□□□□ 0.49
CPSF1-206ENST00000531480 IGHMBP2P38935 993 aaKnown RBP18.11■□□□□ 0.49
CPSF1-206ENST00000531480 MINPP1Q9UNW1 487 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms