RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZC3H6P61129 1189 aaKnown RBP22.91■■□□□ 1.26
VPS28-213ENST00000530983 FAM173BQ6P4H8 233 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 RAPGEF4Q8WZA2 1011 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 COPRSQ9NQ92 184 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 DBNLQ9UJU6 430 aaKnown RBP22.91■■□□□ 1.26
VPS28-213ENST00000530983 ELP1O95163 1332 aa22.9■■□□□ 1.26
VPS28-213ENST00000530983 RFX5P48382 616 aaPredicted RBP22.9■■□□□ 1.26
VPS28-213ENST00000530983 PIBF1Q8WXW3 757 aa22.9■■□□□ 1.26
VPS28-213ENST00000530983 ZNF496Q96IT1 587 aaPredicted RBP22.9■■□□□ 1.26
VPS28-213ENST00000530983 TTC12Q9H892 705 aaPredicted RBP22.9■■□□□ 1.26
VPS28-213ENST00000530983 ALS2Q96Q42 1657 aa22.9■■□□□ 1.26
VPS28-213ENST00000530983 AP5Z1O43299 807 aa22.9■■□□□ 1.26
VPS28-213ENST00000530983 PHKG2P15735 406 aa22.9■■□□□ 1.26
VPS28-213ENST00000530983 USPL1Q5W0Q7 1092 aa22.9■■□□□ 1.26
VPS28-213ENST00000530983 ATP5JP18859 108 aa22.89■■□□□ 1.25
VPS28-213ENST00000530983 KIF1AQ12756 1690 aa22.89■■□□□ 1.25
VPS28-213ENST00000530983 MST1RQ04912 1400 aa22.88■■□□□ 1.25
VPS28-213ENST00000530983 PTPN12Q05209 780 aaKnown RBP22.88■■□□□ 1.25
VPS28-213ENST00000530983 ANKRD13DQ6ZTN6 518 aa22.88■■□□□ 1.25
VPS28-213ENST00000530983 JARID2Q92833 1246 aaPredicted RBP22.88■■□□□ 1.25
VPS28-213ENST00000530983 TNNI3KQ59H18 835 aa22.88■■□□□ 1.25
VPS28-213ENST00000530983 FPGT-TNNI3KV9GXZ4 949 aa22.88■■□□□ 1.25
VPS28-213ENST00000530983 MEGF6O75095 1541 aa22.88■■□□□ 1.25
VPS28-213ENST00000530983 NLRP2Q9NX02 1062 aa22.87■■□□□ 1.25
VPS28-213ENST00000530983 USP16Q9Y5T5 823 aa22.87■■□□□ 1.25
VPS28-213ENST00000530983 ARFGEF2Q9Y6D5 1785 aa22.87■■□□□ 1.25
VPS28-213ENST00000530983 LIG1P18858 919 aa22.87■■□□□ 1.25
VPS28-213ENST00000530983 PIP4K2AP48426 406 aaPredicted RBP22.87■■□□□ 1.25
VPS28-213ENST00000530983 TFCP2Q12800 502 aa22.87■■□□□ 1.25
VPS28-213ENST00000530983 PRDM4Q9UKN5 801 aa22.87■■□□□ 1.25
VPS28-213ENST00000530983 C1orf167Q5SNV9 1468 aa22.86■■□□□ 1.25
VPS28-213ENST00000530983 CCDC192P0DO97 292 aa22.86■■□□□ 1.25
VPS28-213ENST00000530983 STK3Q13188 491 aa22.86■■□□□ 1.25
VPS28-213ENST00000530983 NDUFB9Q9Y6M9 179 aa22.86■■□□□ 1.25
VPS28-213ENST00000530983 DYNC1I1O14576 645 aa22.86■■□□□ 1.25
VPS28-213ENST00000530983 NOLC1Q14978 699 aaKnown RBP eCLIP22.86■■□□□ 1.25
VPS28-213ENST00000530983 RABL6Q3YEC7 729 aaPredicted RBP22.86■■□□□ 1.25
VPS28-213ENST00000530983 ZNF609O15014 1411 aa22.86■■□□□ 1.25
VPS28-213ENST00000530983 PLCB2Q00722 1185 aa22.85■■□□□ 1.25
VPS28-213ENST00000530983 CHMP3Q9Y3E7 222 aa22.85■■□□□ 1.25
VPS28-213ENST00000530983 CHGBP05060 677 aa22.85■■□□□ 1.25
VPS28-213ENST00000530983 TATP17735 454 aaPredicted RBP22.85■■□□□ 1.25
VPS28-213ENST00000530983 UBE3BQ7Z3V4 1068 aa22.85■■□□□ 1.25
VPS28-213ENST00000530983 RFX7Q2KHR2 1363 aa22.84■■□□□ 1.25
VPS28-213ENST00000530983 SNRPA1P09661 255 aaKnown RBP22.84■■□□□ 1.25
VPS28-213ENST00000530983 KRT32Q14532 448 aa22.84■■□□□ 1.25
VPS28-213ENST00000530983 C17orf53Q8N3J3 647 aaPredicted RBP22.84■■□□□ 1.25
VPS28-213ENST00000530983 SCAND2PQ9GZW5 306 aaPredicted RBP22.84■■□□□ 1.25
VPS28-213ENST00000530983 NUP62CLQ9H1M0 184 aa22.84■■□□□ 1.25
VPS28-213ENST00000530983 MAP3K11Q16584 847 aa22.83■■□□□ 1.25
VPS28-213ENST00000530983 IFNL2Q8IZJ0 200 aa22.83■■□□□ 1.25
VPS28-213ENST00000530983 GTF3C6Q969F1 213 aa22.83■■□□□ 1.25
VPS28-213ENST00000530983 CAMK4Q16566 473 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 CCDC129Q6ZRS4 1044 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 PROSER2Q86WR7 435 aaPredicted RBP22.82■■□□□ 1.24
VPS28-213ENST00000530983 NEK1Q96PY6 1258 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 DBNDD2Q9BQY9 259 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.82■■□□□ 1.24
VPS28-213ENST00000530983 TFIP11Q9UBB9 837 aaKnown RBP22.82■■□□□ 1.24
VPS28-213ENST00000530983 COL18A1P39060 1754 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 SPATA32Q96LK8 384 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 SEC62Q99442 399 aaKnown RBP22.82■■□□□ 1.24
VPS28-213ENST00000530983 SPTLC3Q9NUV7 552 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 MRVI1Q9Y6F6 885 aa22.82■■□□□ 1.24
VPS28-213ENST00000530983 JAK2O60674 1132 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 DNTTIP2Q5QJE6 756 aaKnown RBP22.81■■□□□ 1.24
VPS28-213ENST00000530983 TTC5Q8N0Z6 440 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 FAM200AQ8TCP9 573 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 LEO1Q8WVC0 666 aaPredicted RBP22.81■■□□□ 1.24
VPS28-213ENST00000530983 DNAJC2Q99543 621 aaKnown RBP22.81■■□□□ 1.24
VPS28-213ENST00000530983 DACT1Q9NYF0 836 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 ATP5J2-PTCD1G3V325 749 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 PTCD1O75127 700 aaKnown RBP22.81■■□□□ 1.24
VPS28-213ENST00000530983 TYRO3Q06418 890 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 HAUS7Q99871 368 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 ABCC6O95255 1503 aa22.81■■□□□ 1.24
VPS28-213ENST00000530983 CYP21A2P08686 494 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 DNAJC5Q9H3Z4 198 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 C19orf44Q9H6X5 657 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 GLI3P10071 1580 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 LAMA4Q16363 1823 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 A0A087WZG4 1122 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 CYP27B1O15528 508 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 CASP7P55210 303 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 KCNF1Q9H3M0 494 aa22.8■■□□□ 1.24
VPS28-213ENST00000530983 U3KPZ7 1027 aaPredicted RBP22.8■■□□□ 1.24
VPS28-213ENST00000530983 MCMDC2Q4G0Z9 681 aa22.79■■□□□ 1.24
VPS28-213ENST00000530983 Q6ZUG5 572 aa22.79■■□□□ 1.24
VPS28-213ENST00000530983 MYRIPQ8NFW9 859 aa22.79■■□□□ 1.24
VPS28-213ENST00000530983 DCAF5Q96JK2 942 aa22.79■■□□□ 1.24
VPS28-213ENST00000530983 FMNL2Q96PY5 1086 aa22.79■■□□□ 1.24
VPS28-213ENST00000530983 DDX46Q7L014 1031 aaKnown RBP22.79■■□□□ 1.24
VPS28-213ENST00000530983 MTERF4Q7Z6M4 381 aaKnown RBP22.79■■□□□ 1.24
VPS28-213ENST00000530983 ARID3AQ99856 593 aa22.79■■□□□ 1.24
VPS28-213ENST00000530983 TNMDQ9H2S6 317 aa22.79■■□□□ 1.24
VPS28-213ENST00000530983 PKD1L3Q7Z443 1732 aa22.78■■□□□ 1.24
VPS28-213ENST00000530983 CKAP2LQ8IYA6 745 aa22.78■■□□□ 1.24
VPS28-213ENST00000530983 LAMB4A4D0S4 1761 aa22.78■■□□□ 1.24
VPS28-213ENST00000530983 GOLGA6L4A6NEF3 574 aa22.77■■□□□ 1.24
VPS28-213ENST00000530983 RBM43Q6ZSC3 357 aaKnown RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms