RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 ZNF853P0CG23 659 aa16.82■□□□□ 0.28
CPSF1-204ENST00000529288 SCNN1DP51172 638 aa16.82■□□□□ 0.28
CPSF1-204ENST00000529288 ZNRF3Q9ULT6 936 aa16.82■□□□□ 0.28
CPSF1-204ENST00000529288 IRS4O14654 1257 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-204ENST00000529288 RAD17O75943 681 aa16.81■□□□□ 0.28
CPSF1-204ENST00000529288 CXCL9Q07325 125 aa16.81■□□□□ 0.28
CPSF1-204ENST00000529288 C8orf58Q8NAV2 365 aa16.81■□□□□ 0.28
CPSF1-204ENST00000529288 MYD88Q99836 296 aa16.81■□□□□ 0.28
CPSF1-204ENST00000529288 VPS33BQ9H267 617 aa16.81■□□□□ 0.28
CPSF1-204ENST00000529288 CAPN15O75808 1086 aa16.8■□□□□ 0.28
CPSF1-204ENST00000529288 CCDC184Q52MB2 194 aa16.8■□□□□ 0.28
CPSF1-204ENST00000529288 TNS4Q8IZW8 715 aa16.8■□□□□ 0.28
CPSF1-204ENST00000529288 JARID2Q92833 1246 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-204ENST00000529288 CELF1Q92879 486 aaKnown RBP16.8■□□□□ 0.28
CPSF1-204ENST00000529288 BCL2L13Q9BXK5 485 aa16.8■□□□□ 0.28
CPSF1-204ENST00000529288 RTFDC1Q9BY42 306 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-204ENST00000529288 ABT1Q9ULW3 272 aaKnown RBP16.8■□□□□ 0.28
CPSF1-204ENST00000529288 NSFL1CQ9UNZ2 370 aaKnown RBP16.8■□□□□ 0.28
CPSF1-204ENST00000529288 SCN4AP35499 1836 aa16.8■□□□□ 0.28
CPSF1-204ENST00000529288 CNTNAP1P78357 1384 aa16.79■□□□□ 0.28
CPSF1-204ENST00000529288 C6orf229H3BNL8 230 aa16.79■□□□□ 0.28
CPSF1-204ENST00000529288 RIMBP2O15034 1052 aa16.79■□□□□ 0.28
CPSF1-204ENST00000529288 VEGFBP49765 207 aa16.79■□□□□ 0.28
CPSF1-204ENST00000529288 GMPSP49915 693 aaPredicted RBP16.79■□□□□ 0.28
CPSF1-204ENST00000529288 FMR1Q06787 632 aaKnown RBP eCLIP16.79■□□□□ 0.28
CPSF1-204ENST00000529288 CIAPIN1Q6FI81 312 aa16.79■□□□□ 0.28
CPSF1-204ENST00000529288 KIAA2012Q0VF49 1180 aa16.78■□□□□ 0.28
CPSF1-204ENST00000529288 SF3B3Q15393 1217 aaKnown RBP16.78■□□□□ 0.28
CPSF1-204ENST00000529288 PAXIP1Q6ZW49 1069 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-204ENST00000529288 USP50Q70EL3 339 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-204ENST00000529288 TMC4Q7Z404 712 aa16.78■□□□□ 0.28
CPSF1-204ENST00000529288 ADARB2Q9NS39 739 aaKnown RBP16.78■□□□□ 0.28
CPSF1-204ENST00000529288 GPRC5DQ9NZD1 345 aa16.78■□□□□ 0.28
CPSF1-204ENST00000529288 GRM1Q13255 1194 aa16.77■□□□□ 0.28
CPSF1-204ENST00000529288 TNIP1Q15025 636 aa16.77■□□□□ 0.28
CPSF1-204ENST00000529288 WASHC4Q2M389 1173 aa16.77■□□□□ 0.28
CPSF1-204ENST00000529288 DEFB115Q30KQ5 88 aa16.77■□□□□ 0.28
CPSF1-204ENST00000529288 CCDC30Q5VVM6 783 aa16.77■□□□□ 0.28
CPSF1-204ENST00000529288 TSR2Q969E8 191 aaKnown RBP16.77■□□□□ 0.28
CPSF1-204ENST00000529288 CCDC85AQ96PX6 553 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-204ENST00000529288 TRAF5O00463 557 aa16.76■□□□□ 0.27
CPSF1-204ENST00000529288 DDX58O95786 925 aaKnown RBP16.76■□□□□ 0.27
CPSF1-204ENST00000529288 GPSM2P81274 684 aa16.76■□□□□ 0.27
CPSF1-204ENST00000529288 TRIM28Q13263 835 aaKnown RBP16.76■□□□□ 0.27
CPSF1-204ENST00000529288 TSPYL6Q8N831 410 aa16.76■□□□□ 0.27
CPSF1-204ENST00000529288 ZBTB38Q8NAP3 1195 aaPredicted RBP16.76■□□□□ 0.27
CPSF1-204ENST00000529288 AIDAQ96BJ3 306 aa16.76■□□□□ 0.27
CPSF1-204ENST00000529288 RPS8P62241 208 aaKnown RBP16.75■□□□□ 0.27
CPSF1-204ENST00000529288 DOK7Q18PE1 504 aa16.75■□□□□ 0.27
CPSF1-204ENST00000529288 GPR101Q96P66 508 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-204ENST00000529288 DBNDD1Q9H9R9 158 aa16.75■□□□□ 0.27
CPSF1-204ENST00000529288 SEC31BQ9NQW1 1179 aa16.75■□□□□ 0.27
CPSF1-204ENST00000529288 CWC25Q9NXE8 425 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-204ENST00000529288 SALL2Q9Y467 1007 aaPredicted RBP16.75■□□□□ 0.27
CPSF1-204ENST00000529288 ANKRD36CQ5JPF3 1778 aa16.74■□□□□ 0.27
CPSF1-204ENST00000529288 YDJCA8MPS7 323 aa16.74■□□□□ 0.27
CPSF1-204ENST00000529288 G3V3G9 751 aa16.74■□□□□ 0.27
CPSF1-204ENST00000529288 HSP90B1P14625 803 aaKnown RBP16.74■□□□□ 0.27
CPSF1-204ENST00000529288 ZEB1P37275 1124 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-204ENST00000529288 DCAF8Q5TAQ9 597 aa16.74■□□□□ 0.27
CPSF1-204ENST00000529288 CHMP4AQ9BY43 222 aa16.74■□□□□ 0.27
CPSF1-204ENST00000529288 MAP3K2Q9Y2U5 619 aa16.74■□□□□ 0.27
CPSF1-204ENST00000529288 ZBTB12Q9Y330 459 aaPredicted RBP16.74■□□□□ 0.27
CPSF1-204ENST00000529288 H7C1D1 291 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 FOXN1O15353 648 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 CCDC191Q8NCU4 936 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 EYA3Q99504 573 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 METTL22Q9BUU2 404 aaPredicted RBP16.73■□□□□ 0.27
CPSF1-204ENST00000529288 STK31Q9BXU1 1019 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 MRS2Q9HD23 443 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 POLLQ9UGP5 575 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 CNOT7Q9UIV1 285 aaKnown RBP16.73■□□□□ 0.27
CPSF1-204ENST00000529288 LTBP1Q14766 1721 aa16.73■□□□□ 0.27
CPSF1-204ENST00000529288 SHTN1A0MZ66 631 aa16.72■□□□□ 0.27
CPSF1-204ENST00000529288 RASSF10A6NK89 507 aa16.72■□□□□ 0.27
CPSF1-204ENST00000529288 PCCAP05165 728 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-204ENST00000529288 CCDC152Q4G0S7 254 aa16.72■□□□□ 0.27
CPSF1-204ENST00000529288 GLIS2Q9BZE0 524 aaPredicted RBP16.72■□□□□ 0.27
CPSF1-204ENST00000529288 ZNF408Q9H9D4 720 aa16.72■□□□□ 0.27
CPSF1-204ENST00000529288 ANKIB1Q9P2G1 1089 aa16.72■□□□□ 0.27
CPSF1-204ENST00000529288 PCNTO95613 3336 aa16.72■□□□□ 0.27
CPSF1-204ENST00000529288 WDR33Q9C0J8 1336 aaKnown RBP16.71■□□□□ 0.27
CPSF1-204ENST00000529288 PI4KAP2A4QPH2 592 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 PSMD14O00487 310 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 ANP32CO43423 234 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 PDE8AO60658 829 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 RBM26Q5T8P6 1007 aaKnown RBP16.71■□□□□ 0.27
CPSF1-204ENST00000529288 MICALL2Q8IY33 904 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 PI4KAP1Q8N8J0 262 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 TBC1D16Q8TBP0 767 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 TRPM4Q8TD43 1214 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 ZC3H12CQ9C0D7 883 aaKnown RBP16.71■□□□□ 0.27
CPSF1-204ENST00000529288 LAMB2P55268 1798 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 ADAMTSL1Q8N6G6 1762 aa16.71■□□□□ 0.27
CPSF1-204ENST00000529288 ECE2O60344 883 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 UFL1O94874 794 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 CELF2O95319 508 aaKnown RBP16.7■□□□□ 0.26
CPSF1-204ENST00000529288 HIRAP54198 1017 aaPredicted RBP16.7■□□□□ 0.26
CPSF1-204ENST00000529288 NEXNQ0ZGT2 675 aa16.7■□□□□ 0.26
CPSF1-204ENST00000529288 TWISTNBQ3B726 338 aaPredicted RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms