RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ADAM32Q8TC27 787 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 GIPC2Q8TF65 315 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 BIN2Q9UBW5 565 aaPredicted RBP5.59□□□□□ -1.51
CD44-226ENST00000527889 KIAA1024Q9UPX6 916 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 RGPD2P0DJD1 1756 aa5.59□□□□□ -1.51
CD44-226ENST00000527889 KAT6BQ8WYB5 2073 aa5.59□□□□□ -1.52
CD44-226ENST00000527889 NPHP4O75161 1426 aaPredicted RBP5.58□□□□□ -1.52
CD44-226ENST00000527889 PTCH1Q13635 1447 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 NSD3Q9BZ95 1437 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 PARD3Q8TEW0 1356 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 ATP1A2P50993 1020 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 OCLNQ16625 522 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 TAS1R3Q7RTX0 852 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 ANKLE2Q86XL3 938 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 SIX5Q8N196 739 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 CDK19Q9BWU1 502 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 UNC93B1Q9H1C4 597 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 SLC12A5Q9H2X9 1139 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 PKD2L1Q9P0L9 805 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 CXXC1Q9P0U4 656 aaPredicted RBP5.58□□□□□ -1.52
CD44-226ENST00000527889 EGFL7Q9UHF1 273 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 NOD1Q9Y239 953 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 ATP7BP35670 1465 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 CD163L1Q9NR16 1453 aa5.58□□□□□ -1.52
CD44-226ENST00000527889 TNFRSF10AO00220 468 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 GDF9O60383 454 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 PRMT3O60678 531 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 LINC01559Q495D7 138 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 COL13A1Q5TAT6 717 aaPredicted RBP5.57□□□□□ -1.52
CD44-226ENST00000527889 NBPF14Q5TI25 921 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 CCDC85AQ96PX6 553 aaPredicted RBP5.57□□□□□ -1.52
CD44-226ENST00000527889 CARD14Q9BXL6 1004 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 MRS2Q9HD23 443 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 KNSTRNQ9Y448 316 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 TBX22Q9Y458 520 aa5.57□□□□□ -1.52
CD44-226ENST00000527889 CDK12Q9NYV4 1490 aaPredicted RBP5.57□□□□□ -1.52
CD44-226ENST00000527889 PIK3C2AO00443 1686 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 USP54Q70EL1 1684 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 A0A1W2PP64 1363 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 ATAD2Q6PL18 1390 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 MYBBP1AQ9BQG0 1328 aaKnown RBP5.56□□□□□ -1.52
CD44-226ENST00000527889 ZBTB24O43167 697 aaPredicted RBP5.56□□□□□ -1.52
CD44-226ENST00000527889 HSP90B1P14625 803 aaKnown RBP5.56□□□□□ -1.52
CD44-226ENST00000527889 TCF3P15923 654 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 SEC13P55735 322 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 ZNF211Q13398 564 aaPredicted RBP5.56□□□□□ -1.52
CD44-226ENST00000527889 RALBP1Q15311 655 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 ZNF772Q68DY9 489 aaPredicted RBP5.56□□□□□ -1.52
CD44-226ENST00000527889 SH3BP5LQ7L8J4 393 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 FAM9BQ8IZU0 186 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 PRIMPOLQ96LW4 560 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 ARHGAP9Q9BRR9 750 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 NKTRP30414 1462 aaKnown RBP5.56□□□□□ -1.52
CD44-226ENST00000527889 PPIP5K1Q6PFW1 1433 aa5.56□□□□□ -1.52
CD44-226ENST00000527889 ANKRD36BQ8N2N9 1353 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 PIK3R4Q99570 1358 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 TRPM3Q9HCF6 1732 aaPredicted RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 WASLO00401 505 aaPredicted RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 ICMTO60725 284 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 CD2BP2O95400 341 aaKnown RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 ABL1P00519 1130 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 NEFLP07196 543 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 CENPBP07199 599 aaPredicted RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 KCNA6P17658 529 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 VAMP1P23763 118 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 BRD2P25440 801 aaKnown RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 SH3BP2P78314 561 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 GTF2IP78347 998 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 FOXC1Q12948 553 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 FBXO33Q7Z6M2 555 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 UBE2Q2Q8WVN8 375 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 BAP1Q92560 729 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 PUS7Q96PZ0 661 aaKnown RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 IRX2Q9BZI1 471 aaPredicted RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 DOLKQ9UPQ8 538 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 RGS12O14924 1447 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 BRD4O60885 1362 aaPredicted RBP5.55□□□□□ -1.52
CD44-226ENST00000527889 NINLQ9Y2I6 1382 aa5.55□□□□□ -1.52
CD44-226ENST00000527889 PRR36Q9H6K5 1346 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 KIF1AQ12756 1690 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 SFI1A8K8P3 1242 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 H3BRB1 525 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 GFRA3O60609 400 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 ECM1Q16610 540 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 OXLD1Q5BKU9 147 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 CCDC102BQ68D86 513 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 ZBTB33Q86T24 672 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 DZIP3Q86Y13 1208 aaKnown RBP5.54□□□□□ -1.52
CD44-226ENST00000527889 NUDT16Q96DE0 195 aaKnown RBP5.54□□□□□ -1.52
CD44-226ENST00000527889 TUT1Q9H6E5 874 aaKnown RBP5.54□□□□□ -1.52
CD44-226ENST00000527889 ANO2Q9NQ90 1003 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 CABP1Q9NZU7 370 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 PDZRN3Q9UPQ7 1066 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 PCDHGA11Q9Y5H2 935 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 PEAK1Q9H792 1746 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 NPC1L1Q9UHC9 1359 aa5.54□□□□□ -1.52
CD44-226ENST00000527889 CGNL1Q0VF96 1302 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 NHSL1Q5SYE7 1610 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 WNT7AO00755 349 aa5.53□□□□□ -1.52
CD44-226ENST00000527889 LCE2BO14633 110 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms