RNA–Protein interactions for RNA: ENST00000519617.1

CCNC-208, Transcript of cyclin C, human

TSL 3

Gene CCNC, Length 246 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNC-208	ENST00000519617	IDH3A	P50213	366 aa		4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	GPLD1	P80108	840 aa		4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	PLAUR	Q03405	335 aa		4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	ELMSAN1	Q6PJG2	1045 aa		4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	LARP1	Q6PKG0	1096 aa	Known RBP	4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	IFT43	Q96FT9	208 aa		4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	HINFP	Q9BQA5	517 aa		4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	TFIP11	Q9UBB9	837 aa	Known RBP	4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	MAFB	Q9Y5Q3	323 aa	Predicted RBP	4.27	□□□□□ -1.73
CCNC-208	ENST00000519617	DLL1	O00548	723 aa		4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	ARSD	P51689	593 aa		4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	PTK7	Q13308	1070 aa		4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	PRR23C	Q6ZRP0	262 aa		4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	DZIP1L	Q8IYY4	767 aa	Known RBP	4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	TMEM130	Q8N3G9	435 aa		4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	MEGF10	Q96KG7	1140 aa		4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	KLK14	Q9P0G3	267 aa		4.26	□□□□□ -1.73
CCNC-208	ENST00000519617	SASH3	O75995	380 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	MICAL2	O94851	1124 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	EGFR	P00533	1210 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	RARA	P10276	462 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	ARID4A	P29374	1257 aa	Predicted RBP	4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	NRL	P54845	237 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	MLLT1	Q03111	559 aa	Predicted RBP	4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	DPYD	Q12882	1025 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	CRTC2	Q53ET0	693 aa	Predicted RBP	4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	KANK4	Q5T7N3	995 aa	Predicted RBP	4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	KRT25	Q7Z3Z0	450 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	KRTAP19-1	Q8IUB9	90 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	MYO19	Q96H55	970 aa		4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	TLR7	Q9NYK1	1049 aa	Known RBP	4.25	□□□□□ -1.73
CCNC-208	ENST00000519617	OPLAH	O14841	1288 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	WEE1	P30291	646 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	DGKZ	Q13574	1117 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	C11orf91	Q3C1V1	193 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	ANKMY2	Q8IV38	441 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	FNBP4	Q8N3X1	1017 aa	Predicted RBP	4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	GLMN	Q92990	594 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	SMG9	Q9H0W8	520 aa	Known RBP	4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	AKTIP	Q9H8T0	292 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	QTRT2	Q9H974	415 aa	Known RBP	4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	GOLGA2P5	Q9HBQ8	144 aa		4.24	□□□□□ -1.73
CCNC-208	ENST00000519617	LOC102724428	A0A0B4J2F2	783 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	FAM196B	A6NMK8	535 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617		F8W735	103 aa	Predicted RBP	4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	FOXO3	O43524	673 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	LGR5	O75473	907 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	HOXD8	P13378	290 aa	Predicted RBP	4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	FST	P19883	344 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	SIK1	P57059	783 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	MCTP1	Q6DN14	999 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	HFE2	Q6ZVN8	426 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	PPP1R12C	Q9BZL4	782 aa		4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	MRPL18	Q9H0U6	180 aa	Known RBP	4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	SRA1	Q9HD15	236 aa	Known RBP	4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	RTCB	Q9Y3I0	505 aa	Known RBP	4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.23	□□□□□ -1.73
CCNC-208	ENST00000519617	BTBD11	A6QL63	1104 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L15	C9J2P7	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L10	C9JJH3	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L13	C9JLJ4	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L12	C9JPN9	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L11	C9JVI0	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L21	D6R901	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L18	D6R9N7	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L22	D6RA61	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L17	D6RBQ6	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L19	D6RCP7	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L20	D6RJB6	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	EIF2AK2	P19525	551 aa	Known RBP	4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	USP17L24	Q0WX57	530 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617		Q6ZS46	218 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	MAP4K3	Q8IVH8	894 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	DCAF11	Q8TEB1	546 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	PLD4	Q96BZ4	506 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	ARX	Q96QS3	562 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	VRTN	Q9H8Y1	702 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
CCNC-208	ENST00000519617	PCMTD2	Q9NV79	361 aa		4.22	□□□□□ -1.73
CCNC-208	ENST00000519617		J3QW42	95 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	XYLB	O75191	536 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	ALX3	O95076	343 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	PSAP	P07602	524 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	SOX18	P35713	384 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	CD97	P48960	835 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	SETDB1	Q15047	1291 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	CACTIN-AS1	Q8N1I8	211 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	KRTAP4-7	Q9BYR0	210 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	LRFN2	Q9ULH4	789 aa		4.21	□□□□□ -1.74
CCNC-208	ENST00000519617	MMP20	O60882	483 aa		4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	GHRH	P01286	108 aa		4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	GDF6	Q6KF10	455 aa	Predicted RBP	4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	PROSER2	Q86WR7	435 aa	Predicted RBP	4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	TREML1	Q86YW5	311 aa		4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	CMTR1	Q8N1G2	835 aa	Known RBP	4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	IL22RA1	Q8N6P7	574 aa		4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	CLUAP1	Q96AJ1	413 aa		4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	VTI1A	Q96AJ9	217 aa		4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	MUC3B	Q9H195	1237 aa		4.2	□□□□□ -1.74
CCNC-208	ENST00000519617	USP20	Q9Y2K6	914 aa		4.2	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms