RNA–Protein interactions for RNA: ENST00000515594.5

PHF3-212, Transcript of PHD finger protein 3, humanhuman

TSL 2

Gene PHF3, Length 3,074 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-212ENST00000515594 C1orf141Q5JVX7 400 aa15.32■□□□□ 0.04
PHF3-212ENST00000515594 LEO1Q8WVC0 666 aaPredicted RBP15.32■□□□□ 0.04
PHF3-212ENST00000515594 HSP90B1P14625 803 aaKnown RBP15.32■□□□□ 0.04
PHF3-212ENST00000515594 GUCY1B3Q02153 619 aa15.32■□□□□ 0.04
PHF3-212ENST00000515594 AKAP4Q5JQC9 854 aa15.32■□□□□ 0.04
PHF3-212ENST00000515594 DDX46Q7L014 1031 aaKnown RBP15.32■□□□□ 0.04
PHF3-212ENST00000515594 RIC3Q7Z5B4 369 aa15.32■□□□□ 0.04
PHF3-212ENST00000515594 TM6SF1Q9BZW5 370 aa15.32■□□□□ 0.04
PHF3-212ENST00000515594 TRIM5Q9C035 493 aa15.32■□□□□ 0.04
PHF3-212ENST00000515594 USP16Q9Y5T5 823 aa15.32■□□□□ 0.04
PHF3-212ENST00000515594 U2AF2P26368 475 aaKnown RBP eCLIP15.31■□□□□ 0.041e-6■■□□□ 12.3
PHF3-212ENST00000515594 BRF1Q92994 677 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 CCDC94Q9BW85 323 aaPredicted RBP15.31■□□□□ 0.04
PHF3-212ENST00000515594 NAP1L2Q9ULW6 460 aaPredicted RBP15.31■□□□□ 0.04
PHF3-212ENST00000515594 ATP5J2-PTCD1G3V325 749 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 PTCD1O75127 700 aaKnown RBP15.31■□□□□ 0.04
PHF3-212ENST00000515594 CCDC144BQ3MJ40 725 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 CHST3Q7LGC8 479 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 CCDC144CPQ8IYA2 1237 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 PRIMPOLQ96LW4 560 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 MYD88Q99836 296 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 BABAM1Q9NWV8 329 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 KDM3BQ7LBC6 1761 aa15.31■□□□□ 0.04
PHF3-212ENST00000515594 ORAI2Q96SN7 254 aa15.3■□□□□ 0.04
PHF3-212ENST00000515594 DBNLQ9UJU6 430 aaKnown RBP15.3■□□□□ 0.04
PHF3-212ENST00000515594 HMGN5P82970 282 aaKnown RBP15.3■□□□□ 0.04
PHF3-212ENST00000515594 KCNB2Q92953 911 aa15.3■□□□□ 0.04
PHF3-212ENST00000515594 TAF5LO75529 589 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 PDIA6Q15084 440 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 PLEKHO1Q53GL0 409 aaPredicted RBP15.29■□□□□ 0.04
PHF3-212ENST00000515594 Q6ZUG5 572 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 NCOA5Q9HCD5 579 aaKnown RBP15.29■□□□□ 0.04
PHF3-212ENST00000515594 TFCP2Q12800 502 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 COPS6Q7L5N1 327 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 LINS1Q8NG48 757 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 XAGE3Q8WTP9 111 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 ZNF592Q92610 1267 aa15.29■□□□□ 0.04
PHF3-212ENST00000515594 CCT2P78371 535 aaKnown RBP15.28■□□□□ 0.04
PHF3-212ENST00000515594 DBNDD2Q9BQY9 259 aa15.28■□□□□ 0.04
PHF3-212ENST00000515594 ALDH1L1O75891 902 aa15.28■□□□□ 0.04
PHF3-212ENST00000515594 ZNF165P49910 485 aa15.28■□□□□ 0.04
PHF3-212ENST00000515594 ZC3H6P61129 1189 aaKnown RBP15.28■□□□□ 0.04
PHF3-212ENST00000515594 C11orf57Q6ZUT1 292 aaPredicted RBP15.28■□□□□ 0.04
PHF3-212ENST00000515594 ERC1Q8IUD2 1116 aa15.28■□□□□ 0.04
PHF3-212ENST00000515594 ANKRD24Q8TF21 1146 aa15.28■□□□□ 0.04
PHF3-212ENST00000515594 MED1Q15648 1581 aaPredicted RBP15.28■□□□□ 0.04
PHF3-212ENST00000515594 MED23Q9ULK4 1368 aa15.28■□□□□ 0.04
PHF3-212ENST00000515594 CYP21A2P08686 494 aa15.28■□□□□ 0.04
PHF3-212ENST00000515594 CACTINQ8WUQ7 758 aaKnown RBP15.28■□□□□ 0.04
PHF3-212ENST00000515594 USP27XA6NNY8 438 aa15.27■□□□□ 0.04
PHF3-212ENST00000515594 PSMA5P28066 241 aa15.27■□□□□ 0.04
PHF3-212ENST00000515594 STOX1Q6ZVD7 989 aa15.27■□□□□ 0.04
PHF3-212ENST00000515594 UBE3BQ7Z3V4 1068 aa15.27■□□□□ 0.04
PHF3-212ENST00000515594 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.27■□□□□ 0.04
PHF3-212ENST00000515594 V9GYY5 206 aaPredicted RBP15.27■□□□□ 0.04
PHF3-212ENST00000515594 GCP02774 474 aa15.27■□□□□ 0.03
PHF3-212ENST00000515594 HOXB7P09629 217 aa15.27■□□□□ 0.03
PHF3-212ENST00000515594 FGD1P98174 961 aa15.27■□□□□ 0.03
PHF3-212ENST00000515594 RAB11FIP4Q86YS3 637 aa15.27■□□□□ 0.03
PHF3-212ENST00000515594 KIF13AQ9H1H9 1805 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 H3BQV1 296 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 GTF2F1P35269 517 aaKnown RBP eCLIP15.26■□□□□ 0.032e-6■■■□□ 17.2
PHF3-212ENST00000515594 SCRN1Q12765 414 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 IFFO2Q5TF58 517 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 SYTL4Q96C24 671 aaPredicted RBP15.26■□□□□ 0.03
PHF3-212ENST00000515594 NEURL1BA8MQ27 555 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 ZSCAN25Q6NSZ9 544 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 PDCL2Q8N4E4 241 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 NFATC2IPQ8NCF5 419 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 ZNF609O15014 1411 aa15.26■□□□□ 0.03
PHF3-212ENST00000515594 ZSCAN20P17040 1043 aaPredicted RBP15.25■□□□□ 0.03
PHF3-212ENST00000515594 ZNF75DP51815 510 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 APOBRQ0VD83 1088 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 RNF20Q5VTR2 975 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 CLSTN2Q9H4D0 955 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 GTF3C6Q969F1 213 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 NEK1Q96PY6 1258 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 GOLPH3LQ9H4A5 285 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 GPHNQ9NQX3 736 aaPredicted RBP15.25■□□□□ 0.03
PHF3-212ENST00000515594 CLIP2Q9UDT6 1046 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 NPHP3Q7Z494 1330 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 NFAT5O94916 1531 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 RESTQ13127 1097 aa15.25■□□□□ 0.03
PHF3-212ENST00000515594 THEMISQ8N1K5 641 aaPredicted RBP15.25■□□□□ 0.03
PHF3-212ENST00000515594 DDX21Q9NR30 783 aaKnown RBP eCLIP15.25■□□□□ 0.03
PHF3-212ENST00000515594 GCKRQ14397 625 aa15.24■□□□□ 0.03
PHF3-212ENST00000515594 OTUD7BQ6GQQ9 843 aa15.24■□□□□ 0.03
PHF3-212ENST00000515594 MTERF4Q7Z6M4 381 aaKnown RBP15.24■□□□□ 0.03
PHF3-212ENST00000515594 SCAND2PQ9GZW5 306 aaPredicted RBP15.24■□□□□ 0.03
PHF3-212ENST00000515594 GOLGA6L6A8MZA4 724 aa15.24■□□□□ 0.03
PHF3-212ENST00000515594 PDCP20941 246 aa15.24■□□□□ 0.03
PHF3-212ENST00000515594 CHAF1AQ13111 956 aaPredicted RBP15.24■□□□□ 0.03
PHF3-212ENST00000515594 FILIP1Q7Z7B0 1213 aa15.24■□□□□ 0.03
PHF3-212ENST00000515594 DDX17Q92841 729 aaKnown RBP15.24■□□□□ 0.03
PHF3-212ENST00000515594 ZNF496Q96IT1 587 aaPredicted RBP15.24■□□□□ 0.03
PHF3-212ENST00000515594 GJB4Q9NTQ9 266 aa15.23■□□□□ 0.03
PHF3-212ENST00000515594 TRMT1Q9NXH9 659 aaKnown RBP15.23■□□□□ 0.03
PHF3-212ENST00000515594 ELP1O95163 1332 aa15.23■□□□□ 0.03
PHF3-212ENST00000515594 TNNT1P13805 278 aa15.23■□□□□ 0.03
PHF3-212ENST00000515594 PTPN12Q05209 780 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms