RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 USP44Q9H0E7 712 aa12.73□□□□□ -0.37
NEDD9-214ENST00000513989 TNNQ9UQP3 1299 aa12.73□□□□□ -0.37
NEDD9-214ENST00000513989 GNAI2P04899 355 aa12.72□□□□□ -0.37
NEDD9-214ENST00000513989 MAPK8IP2Q13387 824 aaPredicted RBP12.72□□□□□ -0.37
NEDD9-214ENST00000513989 DNAJC5GQ8N7S2 189 aa12.72□□□□□ -0.37
NEDD9-214ENST00000513989 FAM89AQ96GI7 184 aa12.72□□□□□ -0.37
NEDD9-214ENST00000513989 UBN2Q6ZU65 1347 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 NFKBIEO00221 500 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 IRS4O14654 1257 aaPredicted RBP12.71□□□□□ -0.37
NEDD9-214ENST00000513989 PRR5LQ6MZQ0 368 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 UBE3BQ7Z3V4 1068 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 C2CD5Q86YS7 1000 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 CCDC24Q8N4L8 307 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 NLRP3Q96P20 1036 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 CRBNQ96SW2 442 aa12.71□□□□□ -0.37
NEDD9-214ENST00000513989 UTYO14607 1347 aa12.7□□□□□ -0.38
NEDD9-214ENST00000513989 RTL5Q5HYW3 569 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-214ENST00000513989 SLC10A5Q5PT55 438 aa12.7□□□□□ -0.38
NEDD9-214ENST00000513989 ERICH6BQ5W0A0 696 aa12.7□□□□□ -0.38
NEDD9-214ENST00000513989 PPP4R3CPQ6ZMV5 832 aa12.7□□□□□ -0.38
NEDD9-214ENST00000513989 TTLL6Q8N841 843 aa12.7□□□□□ -0.38
NEDD9-214ENST00000513989 RBM46Q8TBY0 533 aaKnown RBP12.7□□□□□ -0.38
NEDD9-214ENST00000513989 PDZRN3Q9UPQ7 1066 aa12.7□□□□□ -0.38
NEDD9-214ENST00000513989 PDE8AO60658 829 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 NTSR2O95665 410 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 NBPF7P0C2Y1 421 aaPredicted RBP12.69□□□□□ -0.38
NEDD9-214ENST00000513989 APLP1P51693 650 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 IRX6P78412 446 aaPredicted RBP12.69□□□□□ -0.38
NEDD9-214ENST00000513989 ERFEQ4G0M1 354 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 MEIS3Q99687 375 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 BRIP1Q9BX63 1249 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 ZBTB40Q9NUA8 1239 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 CACNA1FO60840 1977 aa12.69□□□□□ -0.38
NEDD9-214ENST00000513989 CDHR2Q9BYE9 1310 aa12.68□□□□□ -0.38
NEDD9-214ENST00000513989 ZC3H4Q9UPT8 1303 aaKnown RBP12.68□□□□□ -0.38
NEDD9-214ENST00000513989 PDE6BP35913 854 aa12.68□□□□□ -0.38
NEDD9-214ENST00000513989 HTRA3P83110 453 aa12.68□□□□□ -0.38
NEDD9-214ENST00000513989 NUTM1Q86Y26 1132 aa12.68□□□□□ -0.38
NEDD9-214ENST00000513989 JARID2Q92833 1246 aaPredicted RBP12.68□□□□□ -0.38
NEDD9-214ENST00000513989 PLA2G12BQ9BX93 195 aa12.68□□□□□ -0.38
NEDD9-214ENST00000513989 RRAGCQ9HB90 399 aa12.68□□□□□ -0.38
NEDD9-214ENST00000513989 KDM2BQ8NHM5 1336 aa12.67□□□□□ -0.38
NEDD9-214ENST00000513989 H0YIN7 160 aa12.67□□□□□ -0.38
NEDD9-214ENST00000513989 HCLS1P14317 486 aaPredicted RBP12.67□□□□□ -0.38
NEDD9-214ENST00000513989 LMNB1P20700 586 aa12.67□□□□□ -0.38
NEDD9-214ENST00000513989 CASP7P55210 303 aa12.67□□□□□ -0.38
NEDD9-214ENST00000513989 CCDC152Q4G0S7 254 aa12.67□□□□□ -0.38
NEDD9-214ENST00000513989 IFFO2Q5TF58 517 aa12.67□□□□□ -0.38
NEDD9-214ENST00000513989 RPAP2Q8IXW5 612 aaPredicted RBP12.67□□□□□ -0.38
NEDD9-214ENST00000513989 EXOC6Q8TAG9 804 aa12.67□□□□□ -0.38
NEDD9-214ENST00000513989 LRRFIP2Q9Y608 721 aaKnown RBP12.67□□□□□ -0.38
NEDD9-214ENST00000513989 POTECB2RU33 542 aa12.66□□□□□ -0.38
NEDD9-214ENST00000513989 HMMRO75330 724 aa12.66□□□□□ -0.38
NEDD9-214ENST00000513989 SYNE4Q8N205 404 aa12.66□□□□□ -0.38
NEDD9-214ENST00000513989 SUCLG2Q96I99 432 aa12.66□□□□□ -0.38
NEDD9-214ENST00000513989 CHMP3Q9Y3E7 222 aa12.66□□□□□ -0.38
NEDD9-214ENST00000513989 GLTPD2A6NH11 291 aa12.65□□□□□ -0.38
NEDD9-214ENST00000513989 C21orf2O43822 256 aa12.65□□□□□ -0.38
NEDD9-214ENST00000513989 CTSWP56202 376 aa12.65□□□□□ -0.38
NEDD9-214ENST00000513989 FSTL1Q12841 308 aa12.65□□□□□ -0.38
NEDD9-214ENST00000513989 CCDC57Q2TAC2 916 aa12.65□□□□□ -0.38
NEDD9-214ENST00000513989 LMBR1LQ6UX01 489 aa12.65□□□□□ -0.38
NEDD9-214ENST00000513989 RPGRQ92834 1020 aaKnown RBP12.65□□□□□ -0.38
NEDD9-214ENST00000513989 SCN4AP35499 1836 aa12.65□□□□□ -0.39
NEDD9-214ENST00000513989 CSF1RP07333 972 aa12.64□□□□□ -0.39
NEDD9-214ENST00000513989 SRGNP10124 158 aa12.64□□□□□ -0.39
NEDD9-214ENST00000513989 FOXO4P98177 505 aa12.64□□□□□ -0.39
NEDD9-214ENST00000513989 ATP8B2P98198 1209 aa12.64□□□□□ -0.39
NEDD9-214ENST00000513989 IFIT5Q13325 482 aaKnown RBP12.64□□□□□ -0.39
NEDD9-214ENST00000513989 SF3B3Q15393 1217 aaKnown RBP12.64□□□□□ -0.39
NEDD9-214ENST00000513989 TAF7LQ5H9L4 462 aa12.64□□□□□ -0.39
NEDD9-214ENST00000513989 DDX46Q7L014 1031 aaKnown RBP12.64□□□□□ -0.39
NEDD9-214ENST00000513989 TTLL11Q8NHH1 800 aa12.64□□□□□ -0.39
NEDD9-214ENST00000513989 ZNF622Q969S3 477 aaKnown RBP eCLIP12.64□□□□□ -0.39
NEDD9-214ENST00000513989 RBM17Q96I25 401 aaKnown RBP12.64□□□□□ -0.39
NEDD9-214ENST00000513989 RWDD1Q9H446 243 aaPredicted RBP12.64□□□□□ -0.39
NEDD9-214ENST00000513989 BICC1Q9H694 974 aaKnown RBP12.64□□□□□ -0.39
NEDD9-214ENST00000513989 ANKRD18BA2A2Z9 1011 aa12.63□□□□□ -0.39
NEDD9-214ENST00000513989 KLRG2A4D1S0 409 aaPredicted RBP12.63□□□□□ -0.39
NEDD9-214ENST00000513989 SRGAP3O43295 1099 aa12.63□□□□□ -0.39
NEDD9-214ENST00000513989 ALDH1B1P30837 517 aa12.63□□□□□ -0.39
NEDD9-214ENST00000513989 CDC5LQ99459 802 aaKnown RBP12.63□□□□□ -0.39
NEDD9-214ENST00000513989 TMX4Q9H1E5 349 aaPredicted RBP12.63□□□□□ -0.39
NEDD9-214ENST00000513989 C1orf115Q9H7X2 142 aa12.63□□□□□ -0.39
NEDD9-214ENST00000513989 ZNF219Q9P2Y4 722 aaPredicted RBP12.63□□□□□ -0.39
NEDD9-214ENST00000513989 LAMB2P55268 1798 aa12.63□□□□□ -0.39
NEDD9-214ENST00000513989 LTBP3Q9NS15 1303 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 ANKRD36CQ5JPF3 1778 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 ADAMTSL1Q8N6G6 1762 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 NPR1P16066 1061 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 RABL6Q3YEC7 729 aaPredicted RBP12.62□□□□□ -0.39
NEDD9-214ENST00000513989 STYK1Q6J9G0 422 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 PRPF40BQ6NWY9 871 aaKnown RBP12.62□□□□□ -0.39
NEDD9-214ENST00000513989 C16orf71Q8IYS4 520 aaPredicted RBP12.62□□□□□ -0.39
NEDD9-214ENST00000513989 ANKRD44Q8N8A2 993 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 C7orf43Q8WVR3 580 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 MASTLQ96GX5 879 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 SNED1Q8TER0 1413 aa12.62□□□□□ -0.39
NEDD9-214ENST00000513989 BBOX1O75936 387 aa12.61□□□□□ -0.39
NEDD9-214ENST00000513989 IGHMBP2P38935 993 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms