RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 GORABQ5T7V8 394 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 SH3TC1Q8TE82 1336 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 TRIM6-TRIM34B2RNG4 842 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 COL23A1Q86Y22 540 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 SEC31BQ9NQW1 1179 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 BTAF1O14981 1849 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 CLCN1P35523 988 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 ATP8B2P98198 1209 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 IFIT5Q13325 482 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 NARFQ9UHQ1 456 aa10.56□□□□□ -0.72
LIMCH1-209ENST00000509277 SNAP23O00161 211 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 NFIXQ14938 502 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 SLC27A3Q5K4L6 730 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 CNBD1Q8NA66 436 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 RILPL2Q969X0 211 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 MPHOSPH8Q99549 860 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 GREM2Q9H772 168 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 HDAC5Q9UQL6 1122 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 MMP10P09238 476 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 LDHAL6AQ6ZMR3 332 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 PUS3Q9BZE2 481 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 GRPEL1Q9HAV7 217 aa10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 MYH14Q7Z406 1995 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-209ENST00000509277 TPTE2Q6XPS3 522 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 CHD1LQ86WJ1 897 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 FOXD4L6Q3SYB3 417 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 FOXD4L3Q6VB84 417 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 AACSQ86V21 672 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 ZNF622Q969S3 477 aaKnown RBP eCLIP10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 LRRCC1Q9C099 1032 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 SIPA1L3O60292 1781 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 UTRNP46939 3433 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 IFIT2P09913 472 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 ITGA6P23229 1130 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 LRRC24Q50LG9 513 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 ZBTB38Q8NAP3 1195 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 KAZALD1Q96I82 304 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 ISCA1Q9BUE6 129 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 CNTNAP4Q9C0A0 1308 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 WNK3Q9BYP7 1800 aa10.54□□□□□ -0.72
LIMCH1-209ENST00000509277 C8orf34Q49A92 452 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 IQSEC3Q9UPP2 1182 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 NDUFB9Q9Y6M9 179 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 THSD7AQ9UPZ6 1657 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 TAF5LO75529 589 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 SERPINB2P05120 415 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 FGD1P98174 961 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 METTL24Q5JXM2 366 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 PLEKHG2Q9H7P9 1386 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 CBX1P83916 185 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 TSC1Q92574 1164 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 NLRP3Q96P20 1036 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 PDCL3Q9H2J4 239 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 BCL2L12Q9HB09 334 aa10.53□□□□□ -0.72
LIMCH1-209ENST00000509277 ANKRD18BA2A2Z9 1011 aa10.52□□□□□ -0.72
LIMCH1-209ENST00000509277 ERVV-1B6SEH8 477 aa10.52□□□□□ -0.72
LIMCH1-209ENST00000509277 PLSCR1O15162 318 aa10.52□□□□□ -0.72
LIMCH1-209ENST00000509277 GYS1P13807 737 aa10.52□□□□□ -0.72
LIMCH1-209ENST00000509277 SLC15A2Q16348 729 aa10.52□□□□□ -0.72
LIMCH1-209ENST00000509277 CLASRPQ8N2M8 674 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-209ENST00000509277 PARP3Q9Y6F1 533 aa10.52□□□□□ -0.72
LIMCH1-209ENST00000509277 H7C1W4 665 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 PCCAP05165 728 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 MCM4P33991 863 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 TIMM10P62072 90 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 TFCP2Q12800 502 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 C3orf67Q6ZVT6 689 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 USP42Q9H9J4 1324 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 KCNJ4P48050 445 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 HDAC1Q13547 482 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 RC3H1Q5TC82 1133 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 RHPN1Q8TCX5 695 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 RPGRQ92834 1020 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 GCC1Q96CN9 775 aa10.52□□□□□ -0.73
LIMCH1-209ENST00000509277 PDE8AO60658 829 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 CTSWP56202 376 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 PARP10Q53GL7 1025 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 SLC51AQ86UW1 340 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 DNAJC2Q99543 621 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 MRE11P49959 708 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 ZNF34Q8IZ26 560 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 RNF214Q8ND24 703 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 CAMKK2Q96RR4 588 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 DCTPP1Q9H773 170 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 SNRKQ9NRH2 765 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 JAG2Q9Y219 1238 aa10.51□□□□□ -0.73
LIMCH1-209ENST00000509277 UQCRHLA0A096LP55 91 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 UQCRHP07919 91 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 IGHMBP2P38935 993 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 ST5P78524 1137 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 ILDR2Q71H61 639 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 CEP126Q9P2H0 1117 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 KDM2BQ8NHM5 1336 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 FBXW7Q969H0 707 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 SSFA2P28290 1259 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 FOXO4P98177 505 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 CCDC152Q4G0S7 254 aa10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 DDX46Q7L014 1031 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-209ENST00000509277 HSCBQ8IWL3 235 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms