RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PNKPQ96T60 521 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 ABCC11Q96J66 1382 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 IQSEC2Q5JU85 1478 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 ME1P48163 572 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 MCTP2Q6DN12 878 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 CCDC91Q7Z6B0 441 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 RPAP2Q8IXW5 612 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 GSPT2Q8IYD1 628 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 AFAP1Q8N556 730 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 FAM204AQ9H8W3 233 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 PARP3Q9Y6F1 533 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 CEP170Q5SW79 1584 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 ERVK-7P63135 1459 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 SCAF11Q99590 1463 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 ADCY10Q96PN6 1610 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 RAB11FIP3O75154 756 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 CDC25CP30307 473 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 HNRNPH1P31943 449 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 ATP6V1AP38606 617 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 TRIM65Q6PJ69 517 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 CALR3Q96L12 384 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 RGS12O14924 1447 aa8.43□□□□□ -1.06
LIMCH1-207ENST00000508466 DNMBPQ6XZF7 1577 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 CCT2P78371 535 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 APOBRQ0VD83 1088 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 LRRFIP1Q32MZ4 808 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 CREBRFQ8IUR6 639 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 GJB4Q9NTQ9 266 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 TOPBP1Q92547 1522 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 ABL1P00519 1130 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 MYBL1P10243 752 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 ZRSR1Q15695 479 aaKnown RBP8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 TOGARAM2Q6ZUX3 1019 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 CHST3Q7LGC8 479 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 CCDC12Q8WUD4 166 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 PPM1EQ8WY54 764 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 CYP46A1Q9Y6A2 500 aa8.42□□□□□ -1.06
LIMCH1-207ENST00000508466 RNF17Q9BXT8 1623 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 FOXO3O43524 673 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 COBLO75128 1261 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 UPP2O95045 317 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 GNAI1P63096 354 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 CFAP100Q494V2 611 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 EGFL6Q8IUX8 553 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 BRF1Q92994 677 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 ZNF622Q969S3 477 aaKnown RBP eCLIP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 EXOC4Q96A65 974 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 FAM227BQ96M60 508 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 ZNF518AQ6AHZ1 1483 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 ERLIN2O94905 339 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 SERPINC1P01008 464 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 POLR3DP05423 398 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 RPSAP08865 295 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 OS9Q13438 667 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 CTR9Q6PD62 1173 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 MMS22LQ6ZRQ5 1243 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 CEP57Q86XR8 500 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 FSIP1Q8NA03 581 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 FAM107BQ9H098 131 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 ZSCAN16Q9H4T2 348 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 FANCLQ9NW38 375 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 DONSONQ9NYP3 566 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 ERCC6Q03468 1493 aa8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 TROQ12816 1431 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-207ENST00000508466 PLXNC1O60486 1568 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 KANK1Q14678 1352 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 EXOC5O00471 708 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 ATP2C2O75185 946 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 WDHD1O75717 1129 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 CORO7P57737 925 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 LRCH2Q5VUJ6 765 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 KCNV1Q6PIU1 500 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 EDC3Q96F86 508 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 LSG1Q9H089 658 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 EIF4G3O43432 1585 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 CCDC189A1A4V9 331 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 H0YHG0 523 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 KINO60870 393 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 HMMRO75330 724 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 PEX19P40855 299 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 MTX1Q13505 466 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 NFE2L2Q16236 605 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 TADA2BQ86TJ2 420 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 MRFAP1L1Q96HT8 127 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 NCOA5Q9HCD5 579 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 BRMS1Q9HCU9 246 aa8.4□□□□□ -1.06
LIMCH1-207ENST00000508466 LRRIQ3A6PVS8 624 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-207ENST00000508466 AKAP17AQ02040 695 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-207ENST00000508466 GPIHBP1Q8IV16 184 aa8.4□□□□□ -1.07
LIMCH1-207ENST00000508466 UBXN6Q9BZV1 441 aa8.4□□□□□ -1.07
LIMCH1-207ENST00000508466 DDX19AQ9NUU7 478 aaKnown RBP8.4□□□□□ -1.07
LIMCH1-207ENST00000508466 CAPN7Q9Y6W3 813 aa8.4□□□□□ -1.07
LIMCH1-207ENST00000508466 PTPRTO14522 1441 aa8.4□□□□□ -1.07
LIMCH1-207ENST00000508466 NUTM2FA1L443 756 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 EFCAB8A8MWE9 144 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 SRGAP3O43295 1099 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 VSNL1P62760 191 aa8.39□□□□□ -1.07
LIMCH1-207ENST00000508466 E2F5Q15329 346 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms