RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 KIAA2012Q0VF49 1180 aa21.94■■□□□ 1.1
VIM-208ENST00000497849 USP48Q86UV5 1035 aa21.94■■□□□ 1.1
VIM-208ENST00000497849 CFAP53Q96M91 514 aa21.94■■□□□ 1.1
VIM-208ENST00000497849 TMX4Q9H1E5 349 aaPredicted RBP21.94■■□□□ 1.1
VIM-208ENST00000497849 CNOT7Q9UIV1 285 aaKnown RBP21.94■■□□□ 1.1
VIM-208ENST00000497849 SLC10A5Q5PT55 438 aa21.93■■□□□ 1.1
VIM-208ENST00000497849 GIGYF2Q6Y7W6 1299 aaKnown RBP21.93■■□□□ 1.1
VIM-208ENST00000497849 NUDCQ9Y266 331 aa21.93■■□□□ 1.1
VIM-208ENST00000497849 DLG5Q8TDM6 1919 aa21.92■■□□□ 1.1
VIM-208ENST00000497849 YDJCA8MPS7 323 aa21.92■■□□□ 1.1
VIM-208ENST00000497849 TNIP1Q15025 636 aa21.92■■□□□ 1.1
VIM-208ENST00000497849 DPP8Q6V1X1 898 aaPredicted RBP21.92■■□□□ 1.1
VIM-208ENST00000497849 PPP1R42Q7Z4L9 355 aa21.92■■□□□ 1.1
VIM-208ENST00000497849 SP8Q8IXZ3 490 aa21.92■■□□□ 1.1
VIM-208ENST00000497849 SAGE1Q9NXZ1 904 aa21.92■■□□□ 1.1
VIM-208ENST00000497849 EIF4A1P60842 406 aaKnown RBP21.91■■□□□ 1.1
VIM-208ENST00000497849 RGMBQ6NW40 437 aa21.91■■□□□ 1.1
VIM-208ENST00000497849 MPNDQ8N594 471 aa21.91■■□□□ 1.1
VIM-208ENST00000497849 ANKRD36CQ5JPF3 1778 aa21.91■■□□□ 1.1
VIM-208ENST00000497849 AKAP11Q9UKA4 1901 aa21.9■■□□□ 1.1
VIM-208ENST00000497849 TAF1P21675 1872 aa21.9■■□□□ 1.1
VIM-208ENST00000497849 KIF23Q02241 960 aaPredicted RBP21.9■■□□□ 1.1
VIM-208ENST00000497849 PARP10Q53GL7 1025 aa21.9■■□□□ 1.1
VIM-208ENST00000497849 MICALL2Q8IY33 904 aa21.9■■□□□ 1.1
VIM-208ENST00000497849 DUOX1Q9NRD9 1551 aa21.9■■□□□ 1.1
VIM-208ENST00000497849 H7C1D1 291 aa21.89■■□□□ 1.09
VIM-208ENST00000497849 BBOX1O75936 387 aa21.89■■□□□ 1.09
VIM-208ENST00000497849 RNF186Q9NXI6 227 aa21.89■■□□□ 1.09
VIM-208ENST00000497849 PRPF38BQ5VTL8 546 aaKnown RBP21.88■■□□□ 1.09
VIM-208ENST00000497849 SAMD7Q7Z3H4 446 aa21.88■■□□□ 1.09
VIM-208ENST00000497849 CCER1Q8TC90 406 aaPredicted RBP21.88■■□□□ 1.09
VIM-208ENST00000497849 UTP14AQ9BVJ6 771 aaKnown RBP21.88■■□□□ 1.09
VIM-208ENST00000497849 GBA2Q9HCG7 927 aaPredicted RBP21.88■■□□□ 1.09
VIM-208ENST00000497849 ZBTB12Q9Y330 459 aaPredicted RBP21.88■■□□□ 1.09
VIM-208ENST00000497849 TRPA1O75762 1119 aa21.87■■□□□ 1.09
VIM-208ENST00000497849 EGFRP00533 1210 aa21.87■■□□□ 1.09
VIM-208ENST00000497849 LRP10Q7Z4F1 713 aa21.87■■□□□ 1.09
VIM-208ENST00000497849 PNISRQ8TF01 805 aaKnown RBP21.87■■□□□ 1.09
VIM-208ENST00000497849 CCDC102AQ96A19 550 aa21.87■■□□□ 1.09
VIM-208ENST00000497849 KRT26Q7Z3Y9 468 aa21.86■■□□□ 1.09
VIM-208ENST00000497849 DPF2Q92785 391 aa21.86■■□□□ 1.09
VIM-208ENST00000497849 THUMPD2Q9BTF0 503 aaKnown RBP21.85■■□□□ 1.09
VIM-208ENST00000497849 LRRC37AA6NMS7 1700 aa21.85■■□□□ 1.09
VIM-208ENST00000497849 ERBB4Q15303 1308 aa21.84■■□□□ 1.09
VIM-208ENST00000497849 ADM5C9JUS6 153 aa21.84■■□□□ 1.09
VIM-208ENST00000497849 ZNF157P51786 506 aaPredicted RBP21.84■■□□□ 1.09
VIM-208ENST00000497849 TBC1D10BQ4KMP7 808 aaPredicted RBP21.84■■□□□ 1.09
VIM-208ENST00000497849 C2orf69Q8N8R5 385 aa21.84■■□□□ 1.09
VIM-208ENST00000497849 CSRNP1Q96S65 589 aa21.84■■□□□ 1.09
VIM-208ENST00000497849 PSMD14O00487 310 aa21.83■■□□□ 1.09
VIM-208ENST00000497849 HCLS1P14317 486 aaPredicted RBP21.83■■□□□ 1.09
VIM-208ENST00000497849 PPP2R1AP30153 589 aa21.83■■□□□ 1.09
VIM-208ENST00000497849 GRAPQ13588 217 aa21.83■■□□□ 1.09
VIM-208ENST00000497849 PDIA6Q15084 440 aa21.83■■□□□ 1.09
VIM-208ENST00000497849 CTU1Q7Z7A3 348 aaKnown RBP21.83■■□□□ 1.09
VIM-208ENST00000497849 GRAPLQ8TC17 118 aaPredicted RBP21.83■■□□□ 1.09
VIM-208ENST00000497849 SLC10A3P09131 477 aa21.82■■□□□ 1.08
VIM-208ENST00000497849 DDX46Q7L014 1031 aaKnown RBP21.81■■□□□ 1.08
VIM-208ENST00000497849 PROSER3Q2NL68 480 aa21.8■■□□□ 1.08
VIM-208ENST00000497849 DCPSQ96C86 337 aaKnown RBP21.8■■□□□ 1.08
VIM-208ENST00000497849 DBNDD1Q9H9R9 158 aa21.8■■□□□ 1.08
VIM-208ENST00000497849 ANXA1P04083 346 aa21.79■■□□□ 1.08
VIM-208ENST00000497849 RBM26Q5T8P6 1007 aaKnown RBP21.79■■□□□ 1.08
VIM-208ENST00000497849 NLRP10Q86W26 655 aa21.79■■□□□ 1.08
VIM-208ENST00000497849 KCNQ5Q9NR82 932 aa21.79■■□□□ 1.08
VIM-208ENST00000497849 HPS5Q9UPZ3 1129 aa21.79■■□□□ 1.08
VIM-208ENST00000497849 RTL9Q8NET4 1388 aa21.78■■□□□ 1.08
VIM-208ENST00000497849 WASHC4Q2M389 1173 aa21.78■■□□□ 1.08
VIM-208ENST00000497849 RPS12P25398 132 aaKnown RBP21.77■■□□□ 1.08
VIM-208ENST00000497849 TMC4Q7Z404 712 aa21.77■■□□□ 1.08
VIM-208ENST00000497849 SCN9AQ15858 1988 aa21.77■■□□□ 1.08
VIM-208ENST00000497849 DDX60Q8IY21 1712 aaKnown RBP21.77■■□□□ 1.08
VIM-208ENST00000497849 ASTN2O75129 1339 aaPredicted RBP21.77■■□□□ 1.07
VIM-208ENST00000497849 COL4A1P02462 1669 aa21.76■■□□□ 1.07
VIM-208ENST00000497849 RIMBP2O15034 1052 aa21.76■■□□□ 1.07
VIM-208ENST00000497849 TRMT112Q9UI30 125 aaKnown RBP21.76■■□□□ 1.07
VIM-208ENST00000497849 SH3TC1Q8TE82 1336 aa21.76■■□□□ 1.07
VIM-208ENST00000497849 EIF2S2P20042 333 aaKnown RBP21.75■■□□□ 1.07
VIM-208ENST00000497849 KIF4BQ2VIQ3 1234 aa21.75■■□□□ 1.07
VIM-208ENST00000497849 RASAL3Q86YV0 1011 aa21.75■■□□□ 1.07
VIM-208ENST00000497849 CDCA5Q96FF9 252 aa21.75■■□□□ 1.07
VIM-208ENST00000497849 PLEKHF1Q96S99 279 aa21.75■■□□□ 1.07
VIM-208ENST00000497849 GGA3Q9NZ52 723 aa21.75■■□□□ 1.07
VIM-208ENST00000497849 POLLQ9UGP5 575 aa21.75■■□□□ 1.07
VIM-208ENST00000497849 NSFL1CQ9UNZ2 370 aaKnown RBP21.75■■□□□ 1.07
VIM-208ENST00000497849 ECE2O60344 883 aa21.74■■□□□ 1.07
VIM-208ENST00000497849 HSP90AB3PQ58FF7 597 aa21.74■■□□□ 1.07
VIM-208ENST00000497849 COPS6Q7L5N1 327 aa21.74■■□□□ 1.07
VIM-208ENST00000497849 SULF1Q8IWU6 871 aa21.74■■□□□ 1.07
VIM-208ENST00000497849 CELF1Q92879 486 aaKnown RBP21.74■■□□□ 1.07
VIM-208ENST00000497849 TCIRG1Q13488 830 aa21.73■■□□□ 1.07
VIM-208ENST00000497849 NFE2L2Q16236 605 aa21.73■■□□□ 1.07
VIM-208ENST00000497849 DOK7Q18PE1 504 aa21.73■■□□□ 1.07
VIM-208ENST00000497849 REM2Q8IYK8 340 aaPredicted RBP21.73■■□□□ 1.07
VIM-208ENST00000497849 GPSM2P81274 684 aa21.72■■□□□ 1.07
VIM-208ENST00000497849 ZNF428Q96B54 188 aa21.72■■□□□ 1.07
VIM-208ENST00000497849 C6orf229H3BNL8 230 aa21.71■■□□□ 1.07
VIM-208ENST00000497849 NEFMP07197 916 aa21.71■■□□□ 1.07
VIM-208ENST00000497849 AIMP1Q12904 312 aaKnown RBP21.71■■□□□ 1.07
VIM-208ENST00000497849 PKN2Q16513 984 aaKnown RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms