RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ROBO2Q9HCK4 1378 aa18.98■□□□□ 0.63
CCDC88B-209ENST00000494080 CDKL5O76039 1030 aa18.98■□□□□ 0.63
CCDC88B-209ENST00000494080 MAP3K12Q12852 859 aa18.98■□□□□ 0.63
CCDC88B-209ENST00000494080 IQGAP3Q86VI3 1631 aa18.98■□□□□ 0.63
CCDC88B-209ENST00000494080 ZPR1O75312 459 aa18.97■□□□□ 0.63
CCDC88B-209ENST00000494080 BRF1Q92994 677 aa18.97■□□□□ 0.63
CCDC88B-209ENST00000494080 PTGS1P23219 599 aa18.97■□□□□ 0.63
CCDC88B-209ENST00000494080 TSPYL1Q9H0U9 437 aa18.97■□□□□ 0.63
CCDC88B-209ENST00000494080 FAM200AQ8TCP9 573 aa18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 KIF1BO60333 1816 aa18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 NMIQ13287 307 aaPredicted RBP18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 BMS1Q14692 1282 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 RIOK3O14730 519 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 HMGB1P09429 215 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 SLC5A1P13866 664 aa18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 CAVIN4Q5BKX8 364 aa18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 DDX19AQ9NUU7 478 aaKnown RBP18.96■□□□□ 0.63
CCDC88B-209ENST00000494080 HECW2Q9P2P5 1572 aa18.96■□□□□ 0.62
CCDC88B-209ENST00000494080 TSPOAP1O95153 1857 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 ERCC4Q92889 916 aaPredicted RBP18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 C8orf76Q96K31 380 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 CFAP74Q9C0B2 1584 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 ABCC3O15438 1527 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 ANAPC15P60006 121 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 RUFY1Q96T51 708 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 FEZ1Q99689 392 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 EFCAB6Q5THR3 1501 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 GOLGA8BA8MQT2 603 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 DHX8Q14562 1220 aaKnown RBP18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 CLTCL1P53675 1640 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 CPA1P15085 419 aa18.95■□□□□ 0.62
CCDC88B-209ENST00000494080 PDIA4P13667 645 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 BRPF1P55201 1214 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 AXDND1Q5T1B0 1012 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 IQSEC3Q9UPP2 1182 aaPredicted RBP18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 ABCC4O15439 1325 aa18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 EIF4A1P60842 406 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 OGFRQ9NZT2 677 aa18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 TET3O43151 1660 aa18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 CDC42BPBQ9Y5S2 1711 aa18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 DNM1Q05193 864 aaKnown RBP18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 TFCP2Q12800 502 aa18.94■□□□□ 0.62
CCDC88B-209ENST00000494080 NEMFO60524 1076 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 PKP1Q13835 747 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 ANO6Q4KMQ2 910 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 CCDC144CPQ8IYA2 1237 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 ZNF496Q96IT1 587 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 ANO10Q9NW15 660 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 EIF3JO75822 258 aaKnown RBP18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 CFAP100Q494V2 611 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 IL15P40933 162 aaPredicted RBP18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 ATP2B3Q16720 1220 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 CCDC102AQ96A19 550 aa18.93■□□□□ 0.62
CCDC88B-209ENST00000494080 TTC41PQ6P2S7 1318 aa18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 TRPM1Q7Z4N2 1603 aa18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 ERLIN1O75477 346 aa18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 SKILP12757 684 aa18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 SNW1Q13573 536 aaKnown RBP18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 CHAMP1Q96JM3 812 aa18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 CTDP1Q9Y5B0 961 aaPredicted RBP18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 BABAM1Q9NWV8 329 aa18.92■□□□□ 0.62
CCDC88B-209ENST00000494080 IFIT3O14879 490 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 RANBP6O60518 1105 aaKnown RBP18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 HMG20BQ9P0W2 317 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 ANKIB1Q9P2G1 1089 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 HELBQ8NG08 1087 aaPredicted RBP18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 BCL2L12Q9HB09 334 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 USP16Q9Y5T5 823 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 ARHGEF10O15013 1369 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 USP44Q9H0E7 712 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 DEF6Q9H4E7 631 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 A1BGP04217 495 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 AK2P54819 239 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 TIMM10P62072 90 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 MICU3Q86XE3 530 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 DACT1Q9NYF0 836 aa18.91■□□□□ 0.62
CCDC88B-209ENST00000494080 DTNBO60941 627 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 KIAA0232Q92628 1395 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 FAM135BQ49AJ0 1406 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 HOXB7P09629 217 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 MCMDC2Q4G0Z9 681 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 CAGE1Q8TC20 777 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 BTG4Q9NY30 223 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 ATP6V1AP38606 617 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 TCEAL9Q9UHQ7 104 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 CD2BP2O95400 341 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 F13A1P00488 732 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 TXLNAP40222 546 aa18.9■□□□□ 0.62
CCDC88B-209ENST00000494080 SHROOM2Q13796 1616 aa18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 SMTNL1A8MU46 457 aa18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 FAM89AQ96GI7 184 aa18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 ZFP91Q96JP5 570 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 AATKQ6ZMQ8 1374 aa18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 POLR3DP05423 398 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 DDB1Q16531 1140 aa18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 SLC52A2Q9HAB3 445 aa18.89■□□□□ 0.61
CCDC88B-209ENST00000494080 CCDC171Q6TFL3 1326 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 SUCLG2Q96I99 432 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 SLC12A7Q9Y666 1083 aa18.88■□□□□ 0.61
CCDC88B-209ENST00000494080 PATL2C9JE40 543 aaKnown RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms