RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 GREM2Q9H772 168 aa24.15■■□□□ 1.46
USP39-218ENST00000493829 HSP90B1P14625 803 aaKnown RBP24.14■■□□□ 1.45
USP39-218ENST00000493829 TTLL11Q8NHH1 800 aa24.14■■□□□ 1.45
USP39-218ENST00000493829 KLHDC4Q8TBB5 520 aa24.14■■□□□ 1.45
USP39-218ENST00000493829 HDAC1Q13547 482 aaPredicted RBP24.13■■□□□ 1.45
USP39-218ENST00000493829 SLC10A5Q5PT55 438 aa24.13■■□□□ 1.45
USP39-218ENST00000493829 POLA2Q14181 598 aa24.12■■□□□ 1.45
USP39-218ENST00000493829 NLRP3Q96P20 1036 aa24.12■■□□□ 1.45
USP39-218ENST00000493829 PA2G4Q9UQ80 394 aaKnown RBP24.12■■□□□ 1.45
USP39-218ENST00000493829 SPEF2Q9C093 1822 aa24.12■■□□□ 1.45
USP39-218ENST00000493829 CSF1RP07333 972 aa24.11■■□□□ 1.45
USP39-218ENST00000493829 SSH3Q8TE77 659 aa24.11■■□□□ 1.45
USP39-218ENST00000493829 COL4A1P02462 1669 aa24.11■■□□□ 1.45
USP39-218ENST00000493829 SOCS7O14512 581 aa24.11■■□□□ 1.45
USP39-218ENST00000493829 POLD1P28340 1107 aa24.11■■□□□ 1.45
USP39-218ENST00000493829 CCDC152Q4G0S7 254 aa24.11■■□□□ 1.45
USP39-218ENST00000493829 ZNF594Q96JF6 807 aaPredicted RBP24.11■■□□□ 1.45
USP39-218ENST00000493829 SIL1Q9H173 461 aa24.11■■□□□ 1.45
USP39-218ENST00000493829 RIC1Q4ADV7 1423 aa24.1■■□□□ 1.45
USP39-218ENST00000493829 COL11A2P13942 1736 aaPredicted RBP24.1■■□□□ 1.45
USP39-218ENST00000493829 APBB1O00213 710 aa24.1■■□□□ 1.45
USP39-218ENST00000493829 ITGA6P23229 1130 aa24.1■■□□□ 1.45
USP39-218ENST00000493829 CCDC57Q2TAC2 916 aa24.1■■□□□ 1.45
USP39-218ENST00000493829 EXOC6BQ9Y2D4 811 aa24.1■■□□□ 1.45
USP39-218ENST00000493829 IFIT5Q13325 482 aaKnown RBP24.09■■□□□ 1.45
USP39-218ENST00000493829 BCL11AQ9H165 835 aa24.09■■□□□ 1.45
USP39-218ENST00000493829 SEC31BQ9NQW1 1179 aa24.09■■□□□ 1.45
USP39-218ENST00000493829 TAF1P21675 1872 aa24.08■■□□□ 1.45
USP39-218ENST00000493829 RFX5P48382 616 aaPredicted RBP24.08■■□□□ 1.45
USP39-218ENST00000493829 TAF7LQ5H9L4 462 aa24.08■■□□□ 1.45
USP39-218ENST00000493829 KDM2BQ8NHM5 1336 aa24.08■■□□□ 1.45
USP39-218ENST00000493829 ANKRD18BA2A2Z9 1011 aa24.07■■□□□ 1.44
USP39-218ENST00000493829 SURF6O75683 361 aaKnown RBP24.07■■□□□ 1.44
USP39-218ENST00000493829 SF3B3Q15393 1217 aaKnown RBP24.07■■□□□ 1.44
USP39-218ENST00000493829 C10orf71Q711Q0 1435 aa24.07■■□□□ 1.44
USP39-218ENST00000493829 BRIP1Q9BX63 1249 aa24.07■■□□□ 1.44
USP39-218ENST00000493829 OS9Q13438 667 aaPredicted RBP24.06■■□□□ 1.44
USP39-218ENST00000493829 RPGRQ92834 1020 aaKnown RBP24.06■■□□□ 1.44
USP39-218ENST00000493829 PTPN12Q05209 780 aaKnown RBP24.05■■□□□ 1.44
USP39-218ENST00000493829 CENPQQ7L2Z9 268 aaPredicted RBP24.05■■□□□ 1.44
USP39-218ENST00000493829 LRP5O75197 1615 aa24.05■■□□□ 1.44
USP39-218ENST00000493829 KLHL34Q8N239 644 aa24.05■■□□□ 1.44
USP39-218ENST00000493829 RTL9Q8NET4 1388 aa24.04■■□□□ 1.44
USP39-218ENST00000493829 DCTPP1Q9H773 170 aa24.04■■□□□ 1.44
USP39-218ENST00000493829 PDE6BP35913 854 aa24.03■■□□□ 1.44
USP39-218ENST00000493829 PTGER2P43116 358 aa24.03■■□□□ 1.44
USP39-218ENST00000493829 SGIP1Q9BQI5 828 aa24.03■■□□□ 1.44
USP39-218ENST00000493829 CRY2Q49AN0 593 aa24.02■■□□□ 1.44
USP39-218ENST00000493829 DDX46Q7L014 1031 aaKnown RBP24.02■■□□□ 1.44
USP39-218ENST00000493829 PUS3Q9BZE2 481 aaKnown RBP24.02■■□□□ 1.44
USP39-218ENST00000493829 COPRSQ9NQ92 184 aa24.02■■□□□ 1.44
USP39-218ENST00000493829 PPP1R1BQ9UD71 204 aaPredicted RBP24.02■■□□□ 1.44
USP39-218ENST00000493829 LRRC24Q50LG9 513 aa24.02■■□□□ 1.44
USP39-218ENST00000493829 C2CD5Q86YS7 1000 aa24.02■■□□□ 1.44
USP39-218ENST00000493829 CELF1Q92879 486 aaKnown RBP24.02■■□□□ 1.44
USP39-218ENST00000493829 GCC1Q96CN9 775 aa24.02■■□□□ 1.44
USP39-218ENST00000493829 CHRNA5P30532 468 aa24.01■■□□□ 1.43
USP39-218ENST00000493829 SMC5Q8IY18 1101 aa24.01■■□□□ 1.43
USP39-218ENST00000493829 CDC5LQ99459 802 aaKnown RBP24.01■■□□□ 1.43
USP39-218ENST00000493829 SPON1Q9HCB6 807 aa24.01■■□□□ 1.43
USP39-218ENST00000493829 CACNA1SQ13698 1873 aa24.01■■□□□ 1.43
USP39-218ENST00000493829 SMARCA5O60264 1052 aaPredicted RBP24■■□□□ 1.43
USP39-218ENST00000493829 G3BP1Q13283 466 aaKnown RBP eCLIP24■■□□□ 1.43
USP39-218ENST00000493829 CNNM1Q9NRU3 951 aa24■■□□□ 1.43
USP39-218ENST00000493829 KIF13BQ9NQT8 1826 aa24■■□□□ 1.43
USP39-218ENST00000493829 IGHMBP2P38935 993 aaKnown RBP23.99■■□□□ 1.43
USP39-218ENST00000493829 LDHAL6AQ6ZMR3 332 aa23.99■■□□□ 1.43
USP39-218ENST00000493829 SKAP1Q86WV1 359 aa23.99■■□□□ 1.43
USP39-218ENST00000493829 ANKRD18AQ8IVF6 992 aa23.99■■□□□ 1.43
USP39-218ENST00000493829 RBM17Q96I25 401 aaKnown RBP23.99■■□□□ 1.43
USP39-218ENST00000493829 KLRG2A4D1S0 409 aaPredicted RBP23.99■■□□□ 1.43
USP39-218ENST00000493829 ANKRD45Q5TZF3 282 aa23.99■■□□□ 1.43
USP39-218ENST00000493829 SLC51AQ86UW1 340 aa23.99■■□□□ 1.43
USP39-218ENST00000493829 MPHOSPH8Q99549 860 aa23.99■■□□□ 1.43
USP39-218ENST00000493829 NOP58Q9Y2X3 529 aaKnown RBP23.99■■□□□ 1.43
USP39-218ENST00000493829 EYA2O00167 538 aa23.98■■□□□ 1.43
USP39-218ENST00000493829 SRGNP10124 158 aa23.98■■□□□ 1.43
USP39-218ENST00000493829 ZNF622Q969S3 477 aaKnown RBP eCLIP23.98■■□□□ 1.43
USP39-218ENST00000493829 H0YIN7 160 aa23.97■■□□□ 1.43
USP39-218ENST00000493829 GRAPQ13588 217 aa23.97■■□□□ 1.43
USP39-218ENST00000493829 HSP90AB4PQ58FF6 505 aa23.97■■□□□ 1.43
USP39-218ENST00000493829 ATG9AQ7Z3C6 839 aa23.97■■□□□ 1.43
USP39-218ENST00000493829 GRAPLQ8TC17 118 aaPredicted RBP23.97■■□□□ 1.43
USP39-218ENST00000493829 IL1RAPL2Q9NP60 686 aa23.97■■□□□ 1.43
USP39-218ENST00000493829 NPR1P16066 1061 aa23.96■■□□□ 1.43
USP39-218ENST00000493829 PDZRN3Q9UPQ7 1066 aa23.96■■□□□ 1.43
USP39-218ENST00000493829 DLEC1Q9Y238 1755 aa23.96■■□□□ 1.43
USP39-218ENST00000493829 KIAA1551Q9HCM1 1747 aa23.96■■□□□ 1.43
USP39-218ENST00000493829 LRRCC1Q9C099 1032 aa23.95■■□□□ 1.43
USP39-218ENST00000493829 LNPKQ9C0E8 428 aa23.95■■□□□ 1.43
USP39-218ENST00000493829 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.95■■□□□ 1.43
USP39-218ENST00000493829 SASH1O94885 1247 aa23.95■■□□□ 1.42
USP39-218ENST00000493829 RPS8P62241 208 aaKnown RBP23.95■■□□□ 1.42
USP39-218ENST00000493829 TFCP2Q12800 502 aa23.95■■□□□ 1.42
USP39-218ENST00000493829 RHPN1Q8TCX5 695 aa23.95■■□□□ 1.42
USP39-218ENST00000493829 MASTLQ96GX5 879 aa23.95■■□□□ 1.42
USP39-218ENST00000493829 ZBTB47Q9UFB7 747 aaPredicted RBP23.95■■□□□ 1.42
USP39-218ENST00000493829 A0A0G2JLW4 131 aa23.94■■□□□ 1.42
USP39-218ENST00000493829 RAB11FIP3O75154 756 aa23.94■■□□□ 1.42
USP39-218ENST00000493829 CIAO1O76071 339 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms