RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 DSC3Q14574 896 aa6.8□□□□□ -1.32
CD46-216ENST00000490278 COL19A1Q14993 1142 aa6.8□□□□□ -1.32
CD46-216ENST00000490278 PNMA5Q96PV4 448 aa6.8□□□□□ -1.32
CD46-216ENST00000490278 SLC30A3Q99726 388 aa6.8□□□□□ -1.32
CD46-216ENST00000490278 ELP3Q9H9T3 547 aa6.8□□□□□ -1.32
CD46-216ENST00000490278 ERBB4Q15303 1308 aa6.79□□□□□ -1.32
CD46-216ENST00000490278 VSIG8P0DPA2 414 aa6.79□□□□□ -1.32
CD46-216ENST00000490278 MX2P20592 715 aa6.79□□□□□ -1.32
CD46-216ENST00000490278 FMR1Q06787 632 aaKnown RBP eCLIP6.79□□□□□ -1.32
CD46-216ENST00000490278 NEUROD1Q13562 356 aa6.79□□□□□ -1.32
CD46-216ENST00000490278 KRT25Q7Z3Z0 450 aa6.79□□□□□ -1.32
CD46-216ENST00000490278 GPR161Q8N6U8 529 aaKnown RBP6.79□□□□□ -1.32
CD46-216ENST00000490278 FOXD4L4Q8WXT5 416 aaPredicted RBP6.79□□□□□ -1.32
CD46-216ENST00000490278 TMEM63CQ9P1W3 806 aa6.79□□□□□ -1.32
CD46-216ENST00000490278 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.79□□□□□ -1.32
CD46-216ENST00000490278 TNFRSF21O75509 655 aa6.78□□□□□ -1.32
CD46-216ENST00000490278 P4HBP07237 508 aaKnown RBP6.78□□□□□ -1.32
CD46-216ENST00000490278 RARAP10276 462 aa6.78□□□□□ -1.32
CD46-216ENST00000490278 BMP4P12644 408 aa6.78□□□□□ -1.32
CD46-216ENST00000490278 TARSP26639 723 aaKnown RBP6.78□□□□□ -1.32
CD46-216ENST00000490278 TTC39BQ5VTQ0 682 aaPredicted RBP6.78□□□□□ -1.32
CD46-216ENST00000490278 RAB44Q7Z6P3 723 aaPredicted RBP6.78□□□□□ -1.32
CD46-216ENST00000490278 SNX29Q8TEQ0 813 aa6.78□□□□□ -1.32
CD46-216ENST00000490278 BHMTQ93088 406 aa6.78□□□□□ -1.32
CD46-216ENST00000490278 ABI2Q9NYB9 513 aaPredicted RBP6.78□□□□□ -1.32
CD46-216ENST00000490278 PRR12Q9ULL5 1215 aa6.78□□□□□ -1.32
CD46-216ENST00000490278 AMOTL2Q9Y2J4 779 aa6.78□□□□□ -1.32
CD46-216ENST00000490278 C2CD2LO14523 706 aa6.77□□□□□ -1.33
CD46-216ENST00000490278 NFKB1P19838 968 aa6.77□□□□□ -1.33
CD46-216ENST00000490278 MAPK8P45983 427 aa6.77□□□□□ -1.33
CD46-216ENST00000490278 GAS6Q14393 721 aa6.77□□□□□ -1.33
CD46-216ENST00000490278 EAPPQ56P03 285 aaPredicted RBP6.77□□□□□ -1.33
CD46-216ENST00000490278 BCL2L13Q9BXK5 485 aa6.77□□□□□ -1.33
CD46-216ENST00000490278 MBIPQ9NS73 344 aa6.77□□□□□ -1.33
CD46-216ENST00000490278 ZFATQ9P243 1243 aa6.77□□□□□ -1.33
CD46-216ENST00000490278 FOXD3Q9UJU5 478 aaPredicted RBP6.77□□□□□ -1.33
CD46-216ENST00000490278 NSFL1CQ9UNZ2 370 aaKnown RBP6.77□□□□□ -1.33
CD46-216ENST00000490278 PHACTR2O75167 634 aa6.76□□□□□ -1.33
CD46-216ENST00000490278 ORC1Q13415 861 aa6.76□□□□□ -1.33
CD46-216ENST00000490278 CSRNP1Q96S65 589 aa6.76□□□□□ -1.33
CD46-216ENST00000490278 COL25A1Q9BXS0 654 aaPredicted RBP6.76□□□□□ -1.33
CD46-216ENST00000490278 DNAJC25Q9H1X3 360 aa6.76□□□□□ -1.33
CD46-216ENST00000490278 EIF1AYO14602 144 aaKnown RBP6.75□□□□□ -1.33
CD46-216ENST00000490278 MMP20O60882 483 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 CPNE3O75131 537 aaKnown RBP6.75□□□□□ -1.33
CD46-216ENST00000490278 MAP3K6O95382 1288 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 MAP2K3P46734 347 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 GSK3AP49840 483 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 KCNMA1Q12791 1236 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 ENOX2Q16206 610 aaKnown RBP6.75□□□□□ -1.33
CD46-216ENST00000490278 ZNF468Q5VIY5 522 aaPredicted RBP6.75□□□□□ -1.33
CD46-216ENST00000490278 FBXO33Q7Z6M2 555 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 SYT9Q86SS6 491 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 C1orf127Q8N9H9 656 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 OR13H1Q8NG92 308 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 PMEPA1Q969W9 287 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 ZFYVE28Q9HCC9 887 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 AVENQ9NQS1 362 aaPredicted RBP6.75□□□□□ -1.33
CD46-216ENST00000490278 CNTN3Q9P232 1028 aa6.75□□□□□ -1.33
CD46-216ENST00000490278 PNMA6FA0A0J9YX94 578 aa6.74□□□□□ -1.33
CD46-216ENST00000490278 RBM47A0AV96 593 aaKnown RBP6.74□□□□□ -1.33
CD46-216ENST00000490278 PSAPP07602 524 aa6.74□□□□□ -1.33
CD46-216ENST00000490278 FGD1P98174 961 aa6.74□□□□□ -1.33
CD46-216ENST00000490278 ATP2B2Q01814 1243 aa6.74□□□□□ -1.33
CD46-216ENST00000490278 RNFT1Q5M7Z0 435 aa6.74□□□□□ -1.33
CD46-216ENST00000490278 DHX32Q7L7V1 743 aaKnown RBP6.74□□□□□ -1.33
CD46-216ENST00000490278 CHRDQ9H2X0 955 aa6.74□□□□□ -1.33
CD46-216ENST00000490278 TLR7Q9NYK1 1049 aaKnown RBP6.74□□□□□ -1.33
CD46-216ENST00000490278 PHF20L1A8MW92 1017 aa6.73□□□□□ -1.33
CD46-216ENST00000490278 SIN3BO75182 1162 aa6.73□□□□□ -1.33
CD46-216ENST00000490278 LDHBP07195 334 aaKnown RBP6.73□□□□□ -1.33
CD46-216ENST00000490278 ARAFP10398 606 aa6.73□□□□□ -1.33
CD46-216ENST00000490278 CES1P23141 567 aa6.73□□□□□ -1.33
CD46-216ENST00000490278 SOX18P35713 384 aa6.73□□□□□ -1.33
CD46-216ENST00000490278 PLAURQ03405 335 aa6.73□□□□□ -1.33
CD46-216ENST00000490278 ZNF326Q5BKZ1 582 aaKnown RBP6.73□□□□□ -1.33
CD46-216ENST00000490278 GIPC2Q8TF65 315 aa6.73□□□□□ -1.33
CD46-216ENST00000490278 IGF1RP08069 1367 aa6.72□□□□□ -1.33
CD46-216ENST00000490278 CYP2E1P05181 493 aaPredicted RBP6.72□□□□□ -1.33
CD46-216ENST00000490278 HOXD8P13378 290 aaPredicted RBP6.72□□□□□ -1.33
CD46-216ENST00000490278 ZNF16P17020 682 aaPredicted RBP6.72□□□□□ -1.33
CD46-216ENST00000490278 ADH6P28332 368 aa6.72□□□□□ -1.33
CD46-216ENST00000490278 PCBP4P57723 403 aaKnown RBP6.72□□□□□ -1.33
CD46-216ENST00000490278 SRSF11Q05519 484 aaKnown RBP6.72□□□□□ -1.33
CD46-216ENST00000490278 USPL1Q5W0Q7 1092 aa6.72□□□□□ -1.33
CD46-216ENST00000490278 ALG1LQ6GMV1 187 aa6.72□□□□□ -1.33
CD46-216ENST00000490278 UBE2OQ9C0C9 1292 aaKnown RBP6.72□□□□□ -1.33
CD46-216ENST00000490278 IGFLR1Q9H665 355 aa6.72□□□□□ -1.33
CD46-216ENST00000490278 WWC3Q9ULE0 1092 aa6.72□□□□□ -1.33
CD46-216ENST00000490278 EREGO14944 169 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 PRPF40AO75400 957 aaKnown RBP6.71□□□□□ -1.34
CD46-216ENST00000490278 NRLP54845 237 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 KRT76Q01546 638 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 TAGLNQ01995 201 aaKnown RBP6.71□□□□□ -1.34
CD46-216ENST00000490278 PCSK7Q16549 785 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 TRPM4Q8TD43 1214 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 FBF1Q8TES7 1133 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 CCDC74AQ96AQ1 378 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 CNTNAP3BQ96NU0 1288 aa6.71□□□□□ -1.34
CD46-216ENST00000490278 CNTNAP3Q9BZ76 1288 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms