RNA–Protein interactions for RNA: ENST00000489728.1

CPSF7-212, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4

Gene CPSF7, Length 488 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-212ENST00000489728 ABCC4O15439 1325 aa14.01□□□□□ -0.17
CPSF7-212ENST00000489728 CTSWP56202 376 aa14.01□□□□□ -0.17
CPSF7-212ENST00000489728 GRAPQ13588 217 aa14.01□□□□□ -0.17
CPSF7-212ENST00000489728 CCDC93Q567U6 631 aa14.01□□□□□ -0.17
CPSF7-212ENST00000489728 RTKN2Q8IZC4 609 aa14.01□□□□□ -0.17
CPSF7-212ENST00000489728 GRAPLQ8TC17 118 aaPredicted RBP14.01□□□□□ -0.17
CPSF7-212ENST00000489728 SNED1Q8TER0 1413 aa14□□□□□ -0.17
CPSF7-212ENST00000489728 PPEF1O14829 653 aaPredicted RBP14□□□□□ -0.17
CPSF7-212ENST00000489728 C21orf2O43822 256 aa14□□□□□ -0.17
CPSF7-212ENST00000489728 RTL5Q5HYW3 569 aaPredicted RBP14□□□□□ -0.17
CPSF7-212ENST00000489728 ATF7IPQ6VMQ6 1270 aa14□□□□□ -0.17
CPSF7-212ENST00000489728 ARHGAP27Q6ZUM4 889 aa14□□□□□ -0.17
CPSF7-212ENST00000489728 TMX4Q9H1E5 349 aaPredicted RBP14□□□□□ -0.17
CPSF7-212ENST00000489728 C9orf78Q9NZ63 289 aaPredicted RBP14□□□□□ -0.17
CPSF7-212ENST00000489728 ZC3H4Q9UPT8 1303 aaKnown RBP13.99□□□□□ -0.17
CPSF7-212ENST00000489728 ATP6V0A2Q9Y487 856 aa13.99□□□□□ -0.17
CPSF7-212ENST00000489728 BCAR3O75815 825 aa13.98□□□□□ -0.17
CPSF7-212ENST00000489728 CSF1RP07333 972 aa13.98□□□□□ -0.17
CPSF7-212ENST00000489728 ZKSCAN2Q63HK3 967 aa13.98□□□□□ -0.17
CPSF7-212ENST00000489728 INTS3Q68E01 1043 aaKnown RBP13.98□□□□□ -0.17
CPSF7-212ENST00000489728 TTLL11Q8NHH1 800 aa13.98□□□□□ -0.17
CPSF7-212ENST00000489728 PSMD1Q99460 953 aa13.98□□□□□ -0.17
CPSF7-212ENST00000489728 TAOK3Q9H2K8 898 aa13.98□□□□□ -0.17
CPSF7-212ENST00000489728 HDAC5Q9UQL6 1122 aa13.98□□□□□ -0.17
CPSF7-212ENST00000489728 SBF1O95248 1867 aa13.97□□□□□ -0.17
CPSF7-212ENST00000489728 NFKBIEO00221 500 aa13.97□□□□□ -0.17
CPSF7-212ENST00000489728 TRIM27P14373 513 aa13.97□□□□□ -0.17
CPSF7-212ENST00000489728 LMNB1P20700 586 aa13.97□□□□□ -0.17
CPSF7-212ENST00000489728 FKBP4Q02790 459 aaKnown RBP eCLIP13.97□□□□□ -0.17
CPSF7-212ENST00000489728 SP8Q8IXZ3 490 aa13.97□□□□□ -0.17
CPSF7-212ENST00000489728 CDC5LQ99459 802 aaKnown RBP13.97□□□□□ -0.17
CPSF7-212ENST00000489728 RPS8P62241 208 aaKnown RBP13.96□□□□□ -0.17
CPSF7-212ENST00000489728 FRAT1Q92837 279 aaPredicted RBP13.96□□□□□ -0.17
CPSF7-212ENST00000489728 VPS33BQ9H267 617 aa13.96□□□□□ -0.17
CPSF7-212ENST00000489728 DICER1Q9UPY3 1922 aaKnown RBP13.96□□□□□ -0.18
CPSF7-212ENST00000489728 MS4A1P11836 297 aa13.95□□□□□ -0.18
CPSF7-212ENST00000489728 YY1P25490 414 aa13.95□□□□□ -0.18
CPSF7-212ENST00000489728 FOXO4P98177 505 aa13.95□□□□□ -0.18
CPSF7-212ENST00000489728 ANKRD18AQ8IVF6 992 aa13.95□□□□□ -0.18
CPSF7-212ENST00000489728 JARID2Q92833 1246 aaPredicted RBP13.95□□□□□ -0.18
CPSF7-212ENST00000489728 USP44Q9H0E7 712 aa13.95□□□□□ -0.18
CPSF7-212ENST00000489728 RCAN3Q9UKA8 241 aa13.95□□□□□ -0.18
CPSF7-212ENST00000489728 NBPF7P0C2Y1 421 aaPredicted RBP13.94□□□□□ -0.18
CPSF7-212ENST00000489728 RASSF7Q02833 373 aa13.94□□□□□ -0.18
CPSF7-212ENST00000489728 LTBP1Q14766 1721 aa13.94□□□□□ -0.18
CPSF7-212ENST00000489728 RABL6Q3YEC7 729 aaPredicted RBP13.94□□□□□ -0.18
CPSF7-212ENST00000489728 TIAM2Q8IVF5 1701 aa13.94□□□□□ -0.18
CPSF7-212ENST00000489728 SUPT20HQ8NEM7 779 aa13.94□□□□□ -0.18
CPSF7-212ENST00000489728 CELF1Q92879 486 aaKnown RBP13.94□□□□□ -0.18
CPSF7-212ENST00000489728 RTFDC1Q9BY42 306 aaPredicted RBP13.94□□□□□ -0.18
CPSF7-212ENST00000489728 GREM2Q9H772 168 aa13.94□□□□□ -0.18
CPSF7-212ENST00000489728 ZNF219Q9P2Y4 722 aaPredicted RBP13.94□□□□□ -0.18
CPSF7-212ENST00000489728 TAF1P21675 1872 aa13.93□□□□□ -0.18
CPSF7-212ENST00000489728 GNAI3P08754 354 aa13.93□□□□□ -0.18
CPSF7-212ENST00000489728 C9orf131Q5VYM1 1079 aa13.93□□□□□ -0.18
CPSF7-212ENST00000489728 BSDC1Q9NW68 430 aaPredicted RBP13.93□□□□□ -0.18
CPSF7-212ENST00000489728 RNF181Q9P0P0 153 aa13.93□□□□□ -0.18
CPSF7-212ENST00000489728 COL4A1P02462 1669 aa13.93□□□□□ -0.18
CPSF7-212ENST00000489728 ANKRD18BA2A2Z9 1011 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 UBTFL1P0CB47 393 aaPredicted RBP13.92□□□□□ -0.18
CPSF7-212ENST00000489728 ITGA6P23229 1130 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 IGHMBP2P38935 993 aaKnown RBP13.92□□□□□ -0.18
CPSF7-212ENST00000489728 IFIT5Q13325 482 aaKnown RBP13.92□□□□□ -0.18
CPSF7-212ENST00000489728 FAM161AQ3B820 660 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 LMBR1LQ6UX01 489 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 DPP8Q6V1X1 898 aaPredicted RBP13.92□□□□□ -0.18
CPSF7-212ENST00000489728 FTSJ3Q8IY81 847 aaKnown RBP13.92□□□□□ -0.18
CPSF7-212ENST00000489728 DZIP1LQ8IYY4 767 aaKnown RBP13.92□□□□□ -0.18
CPSF7-212ENST00000489728 MPNDQ8N594 471 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 SUCLG2Q96I99 432 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 SEC31BQ9NQW1 1179 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 PODXL2Q9NZ53 605 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 DUOX1Q9NRD9 1551 aa13.92□□□□□ -0.18
CPSF7-212ENST00000489728 CCDC57Q2TAC2 916 aa13.91□□□□□ -0.18
CPSF7-212ENST00000489728 OLFM4Q6UX06 510 aa13.91□□□□□ -0.18
CPSF7-212ENST00000489728 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.91□□□□□ -0.18
CPSF7-212ENST00000489728 KAZALD1Q96I82 304 aa13.91□□□□□ -0.18
CPSF7-212ENST00000489728 YTHDC1Q96MU7 727 aaKnown RBP13.91□□□□□ -0.18
CPSF7-212ENST00000489728 CCDC88AQ3V6T2 1871 aa13.91□□□□□ -0.18
CPSF7-212ENST00000489728 IARSP41252 1262 aaKnown RBP13.9□□□□□ -0.18
CPSF7-212ENST00000489728 PRELPP51888 382 aa13.9□□□□□ -0.18
CPSF7-212ENST00000489728 EPHA10Q5JZY3 1008 aa13.9□□□□□ -0.18
CPSF7-212ENST00000489728 CCDC85AQ96PX6 553 aaPredicted RBP13.9□□□□□ -0.18
CPSF7-212ENST00000489728 BICC1Q9H694 974 aaKnown RBP13.9□□□□□ -0.18
CPSF7-212ENST00000489728 SPEF2Q9C093 1822 aa13.9□□□□□ -0.18
CPSF7-212ENST00000489728 XDHP47989 1333 aa13.9□□□□□ -0.19
CPSF7-212ENST00000489728 ANKRD44Q8N8A2 993 aa13.89□□□□□ -0.19
CPSF7-212ENST00000489728 CLUAP1Q96AJ1 413 aa13.89□□□□□ -0.19
CPSF7-212ENST00000489728 MPHOSPH8Q99549 860 aa13.89□□□□□ -0.19
CPSF7-212ENST00000489728 ZNF277Q9NRM2 450 aaPredicted RBP13.89□□□□□ -0.19
CPSF7-212ENST00000489728 KIAA2012Q0VF49 1180 aa13.88□□□□□ -0.19
CPSF7-212ENST00000489728 TMEM57Q8N5G2 664 aa13.88□□□□□ -0.19
CPSF7-212ENST00000489728 EYA3Q99504 573 aa13.88□□□□□ -0.19
CPSF7-212ENST00000489728 MEIS3Q99687 375 aa13.88□□□□□ -0.19
CPSF7-212ENST00000489728 ANKRD2Q9GZV1 360 aa13.88□□□□□ -0.19
CPSF7-212ENST00000489728 MINPP1Q9UNW1 487 aa13.88□□□□□ -0.19
CPSF7-212ENST00000489728 CHMP3Q9Y3E7 222 aa13.88□□□□□ -0.19
CPSF7-212ENST00000489728 GPSM2P81274 684 aa13.87□□□□□ -0.19
CPSF7-212ENST00000489728 MTX1Q13505 466 aa13.87□□□□□ -0.19
CPSF7-212ENST00000489728 PDE3AQ14432 1141 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms