RNA–Protein interactions for RNA: ENST00000488146.5

DEPDC1-203, Transcript of DEP domain containing 1, humanhuman

TSL 2

Gene DEPDC1, Length 2,658 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-203ENST00000488146 RTKN2Q8IZC4 609 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 GCC1Q96CN9 775 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 PCDHGA4Q9Y5G9 962 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 PAPPA2Q9BXP8 1791 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 C3orf80F5H4A9 247 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 LSM11P83369 360 aaKnown RBP eCLIP3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 MYSM1Q5VVJ2 828 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 NUTM2GQ5VZR2 741 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 PTF1AQ7RTS3 328 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 AEBP1Q8IUX7 1158 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 SUPT20HQ8NEM7 779 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 CHMP4AQ9BY43 222 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 LIMD1Q9UGP4 676 aa3.71□□□□□ -1.82
DEPDC1-203ENST00000488146 HEG1Q9ULI3 1381 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 ERVV-1B6SEH8 477 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 MMP10P09238 476 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 PDIA4P13667 645 aaKnown RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 PBX2P40425 430 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 ITPK1Q13572 414 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 PKN2Q16513 984 aaKnown RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 NPM2Q86SE8 214 aaKnown RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 TTLL6Q8N841 843 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 GAS2L2Q8NHY3 880 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 SLC12A5Q9H2X9 1139 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 SLC52A2Q9HAB3 445 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 GDPD2Q9HCC8 539 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 USP35Q9P2H5 1018 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 LHX6Q9UPM6 363 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 ZNF652Q9Y2D9 606 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 ZNF646O15015 1829 aaPredicted RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 HOXA10P31260 410 aaPredicted RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 RFC4P35249 363 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 CLCN1P35523 988 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 FKBP4Q02790 459 aaKnown RBP eCLIP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 SH3D19Q5HYK7 790 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 C9orf131Q5VYM1 1079 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 INTS5Q6P9B9 1019 aaKnown RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 USP50Q70EL3 339 aaPredicted RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 ACSBG1Q96GR2 724 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 EYA1Q99502 592 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 RTFDC1Q9BY42 306 aaPredicted RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 FAM217BQ9NTX9 383 aaPredicted RBP3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 POLKQ9UBT6 870 aa3.7□□□□□ -1.82
DEPDC1-203ENST00000488146 STARD3NLO95772 234 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 CYP19A1P11511 503 aaPredicted RBP3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 NPR1P16066 1061 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 ATP6V1AP38606 617 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 EIF5P55010 431 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 FKBP1BP68106 108 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 EIF4A2Q14240 407 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 QPCTQ16769 361 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 C1orf141Q5JVX7 400 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 AIDAQ96BJ3 306 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 TMUB1Q9BVT8 246 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 PDGFDQ9GZP0 370 aaPredicted RBP3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 NYXQ9GZU5 481 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 SMAPO00193 183 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 HSP90B1P14625 803 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 DPEP1P16444 411 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 IL13P35225 146 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 CCDC93Q567U6 631 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 PTCD2Q8WV60 388 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 C7orf43Q8WVR3 580 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 MASTLQ96GX5 879 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 CRAMP1Q96RY5 1269 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 PNNQ9H307 717 aaKnown RBP3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 WBP1LQ9NX94 342 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 COG6Q9Y2V7 657 aa3.69□□□□□ -1.82
DEPDC1-203ENST00000488146 SSC5DA1L4H1 1573 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 POM121CA8CG34 1229 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 H0YIN7 160 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 FZD9O00144 591 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 ALDH1B1P30837 517 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 CRKLP46109 303 aaKnown RBP3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 CABP4P57796 275 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 ST5P78524 1137 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 SKIV2LQ15477 1246 aaKnown RBP3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 CRY2Q49AN0 593 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 TNS4Q8IZW8 715 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 ZNF454Q8N9F8 522 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 DDX54Q8TDD1 881 aaKnown RBP3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 TBC1D2Q9BYX2 928 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 FAM198AQ9UFP1 575 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 PITPNM2Q9BZ72 1349 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 CCDC88AQ3V6T2 1871 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 ARAP2Q8WZ64 1704 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 TMEM88BA6NKF7 163 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 RNMTO43148 476 aaKnown RBP3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 ZPR1O75312 459 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 HOXB7P09629 217 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 NDUFV2P19404 249 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 RPS12P25398 132 aaKnown RBP3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 DDR1Q08345 913 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 SLC10A5Q5PT55 438 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 GPC2Q8N158 579 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 HLA-CQ95604 372 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 ADAM33Q9BZ11 813 aa3.68□□□□□ -1.82
DEPDC1-203ENST00000488146 HSPA1AP0DMV8 641 aaKnown RBP3.67□□□□□ -1.82
DEPDC1-203ENST00000488146 HSPA1BP0DMV9 641 aaKnown RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms