RNA–Protein interactions for RNA: ENST00000479941.1

ATG4B-219, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 2

Gene ATG4B, Length 374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-219ENST00000479941 UTYO14607 1347 aa13.66□□□□□ -0.22
ATG4B-219ENST00000479941 PPEF1O14829 653 aaPredicted RBP13.66□□□□□ -0.22
ATG4B-219ENST00000479941 CTSWP56202 376 aa13.66□□□□□ -0.22
ATG4B-219ENST00000479941 GRAPQ13588 217 aa13.66□□□□□ -0.22
ATG4B-219ENST00000479941 INTS3Q68E01 1043 aaKnown RBP13.66□□□□□ -0.22
ATG4B-219ENST00000479941 CC2D2BQ6DHV5 1058 aa13.66□□□□□ -0.22
ATG4B-219ENST00000479941 TMC4Q7Z404 712 aa13.66□□□□□ -0.22
ATG4B-219ENST00000479941 TTLL11Q8NHH1 800 aa13.66□□□□□ -0.22
ATG4B-219ENST00000479941 GRAPLQ8TC17 118 aaPredicted RBP13.66□□□□□ -0.22
ATG4B-219ENST00000479941 ZNF219Q9P2Y4 722 aaPredicted RBP13.66□□□□□ -0.22
ATG4B-219ENST00000479941 RCAN3Q9UKA8 241 aa13.66□□□□□ -0.22
ATG4B-219ENST00000479941 SLX4Q8IY92 1834 aa13.65□□□□□ -0.22
ATG4B-219ENST00000479941 NBPF7P0C2Y1 421 aaPredicted RBP13.65□□□□□ -0.22
ATG4B-219ENST00000479941 GRIPAP1Q4V328 841 aa13.65□□□□□ -0.22
ATG4B-219ENST00000479941 CCDC93Q567U6 631 aa13.65□□□□□ -0.22
ATG4B-219ENST00000479941 USP44Q9H0E7 712 aa13.65□□□□□ -0.22
ATG4B-219ENST00000479941 TMX4Q9H1E5 349 aaPredicted RBP13.65□□□□□ -0.22
ATG4B-219ENST00000479941 RTL9Q8NET4 1388 aa13.64□□□□□ -0.23
ATG4B-219ENST00000479941 CSF1RP07333 972 aa13.64□□□□□ -0.23
ATG4B-219ENST00000479941 RTKN2Q8IZC4 609 aa13.64□□□□□ -0.23
ATG4B-219ENST00000479941 MS4A1P11836 297 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 RPS8P62241 208 aaKnown RBP13.63□□□□□ -0.23
ATG4B-219ENST00000479941 FOXO4P98177 505 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 SP8Q8IXZ3 490 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 FTSJ3Q8IY81 847 aaKnown RBP13.63□□□□□ -0.23
ATG4B-219ENST00000479941 CELF1Q92879 486 aaKnown RBP13.63□□□□□ -0.23
ATG4B-219ENST00000479941 CLUAP1Q96AJ1 413 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 CCDC85AQ96PX6 553 aaPredicted RBP13.63□□□□□ -0.23
ATG4B-219ENST00000479941 CDC5LQ99459 802 aaKnown RBP13.63□□□□□ -0.23
ATG4B-219ENST00000479941 GREM2Q9H772 168 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 SEC31BQ9NQW1 1179 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 HDAC5Q9UQL6 1122 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 ATP6V0A2Q9Y487 856 aa13.63□□□□□ -0.23
ATG4B-219ENST00000479941 CACNA1SQ13698 1873 aa13.62□□□□□ -0.23
ATG4B-219ENST00000479941 NFKBIEO00221 500 aa13.62□□□□□ -0.23
ATG4B-219ENST00000479941 DZIP1LQ8IYY4 767 aaKnown RBP13.62□□□□□ -0.23
ATG4B-219ENST00000479941 SUCLG2Q96I99 432 aa13.62□□□□□ -0.23
ATG4B-219ENST00000479941 TAOK3Q9H2K8 898 aa13.62□□□□□ -0.23
ATG4B-219ENST00000479941 TNNQ9UQP3 1299 aa13.62□□□□□ -0.23
ATG4B-219ENST00000479941 MYH3P11055 1940 aa13.62□□□□□ -0.23
ATG4B-219ENST00000479941 LTBP3Q9NS15 1303 aa13.62□□□□□ -0.23
ATG4B-219ENST00000479941 CHD4Q14839 1912 aa13.61□□□□□ -0.23
ATG4B-219ENST00000479941 UBTFL1P0CB47 393 aaPredicted RBP13.61□□□□□ -0.23
ATG4B-219ENST00000479941 EPHA10Q5JZY3 1008 aa13.61□□□□□ -0.23
ATG4B-219ENST00000479941 LMBR1LQ6UX01 489 aa13.61□□□□□ -0.23
ATG4B-219ENST00000479941 OLFM4Q6UX06 510 aa13.61□□□□□ -0.23
ATG4B-219ENST00000479941 ANKRD18AQ8IVF6 992 aa13.61□□□□□ -0.23
ATG4B-219ENST00000479941 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.61□□□□□ -0.23
ATG4B-219ENST00000479941 KAZALD1Q96I82 304 aa13.61□□□□□ -0.23
ATG4B-219ENST00000479941 PSMD1Q99460 953 aa13.61□□□□□ -0.23
ATG4B-219ENST00000479941 ANKRD18BA2A2Z9 1011 aa13.6□□□□□ -0.23
ATG4B-219ENST00000479941 GNAI3P08754 354 aa13.6□□□□□ -0.23
ATG4B-219ENST00000479941 LMNB1P20700 586 aa13.6□□□□□ -0.23
ATG4B-219ENST00000479941 ITGA6P23229 1130 aa13.6□□□□□ -0.23
ATG4B-219ENST00000479941 FKBP4Q02790 459 aaKnown RBP eCLIP13.6□□□□□ -0.23
ATG4B-219ENST00000479941 RASSF7Q02833 373 aa13.6□□□□□ -0.23
ATG4B-219ENST00000479941 IFIT5Q13325 482 aaKnown RBP13.6□□□□□ -0.23
ATG4B-219ENST00000479941 FAM161AQ3B820 660 aa13.6□□□□□ -0.23
ATG4B-219ENST00000479941 RABL6Q3YEC7 729 aaPredicted RBP13.6□□□□□ -0.23
ATG4B-219ENST00000479941 TMEM57Q8N5G2 664 aa13.6□□□□□ -0.23
ATG4B-219ENST00000479941 BICC1Q9H694 974 aaKnown RBP13.6□□□□□ -0.23
ATG4B-219ENST00000479941 FER1L6Q2WGJ9 1857 aa13.59□□□□□ -0.23
ATG4B-219ENST00000479941 SNED1Q8TER0 1413 aa13.59□□□□□ -0.23
ATG4B-219ENST00000479941 IGHMBP2P38935 993 aaKnown RBP13.59□□□□□ -0.23
ATG4B-219ENST00000479941 CCDC57Q2TAC2 916 aa13.59□□□□□ -0.23
ATG4B-219ENST00000479941 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
ATG4B-219ENST00000479941 CHMP3Q9Y3E7 222 aa13.59□□□□□ -0.23
ATG4B-219ENST00000479941 YY1P25490 414 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 C9orf131Q5VYM1 1079 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 DPP8Q6V1X1 898 aaPredicted RBP13.58□□□□□ -0.24
ATG4B-219ENST00000479941 MPNDQ8N594 471 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 ANKRD44Q8N8A2 993 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 SUPT20HQ8NEM7 779 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 MPHOSPH8Q99549 860 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 MEIS3Q99687 375 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 RNF181Q9P0P0 153 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 TAF1P21675 1872 aa13.58□□□□□ -0.24
ATG4B-219ENST00000479941 RLBP1P12271 317 aa13.57□□□□□ -0.24
ATG4B-219ENST00000479941 ITPRIPQ8IWB1 547 aa13.57□□□□□ -0.24
ATG4B-219ENST00000479941 RTFDC1Q9BY42 306 aaPredicted RBP13.57□□□□□ -0.24
ATG4B-219ENST00000479941 VPS33BQ9H267 617 aa13.57□□□□□ -0.24
ATG4B-219ENST00000479941 NSFL1CQ9UNZ2 370 aaKnown RBP13.57□□□□□ -0.24
ATG4B-219ENST00000479941 ZC3H4Q9UPT8 1303 aaKnown RBP13.57□□□□□ -0.24
ATG4B-219ENST00000479941 COL4A1P02462 1669 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 PLIN1O60240 522 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 PRELPP51888 382 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 PDE3AQ14432 1141 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 TAF7LQ5H9L4 462 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 SLC51AQ86UW1 340 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 PANK1Q8TE04 598 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 PODXL2Q9NZ53 605 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 LRRFIP2Q9Y608 721 aaKnown RBP13.56□□□□□ -0.24
ATG4B-219ENST00000479941 LRRC37AA6NMS7 1700 aa13.56□□□□□ -0.24
ATG4B-219ENST00000479941 SBF1O95248 1867 aa13.55□□□□□ -0.24
ATG4B-219ENST00000479941 GNAI2P04899 355 aa13.55□□□□□ -0.24
ATG4B-219ENST00000479941 IARSP41252 1262 aaKnown RBP13.55□□□□□ -0.24
ATG4B-219ENST00000479941 GPSM2P81274 684 aa13.55□□□□□ -0.24
ATG4B-219ENST00000479941 ZNF277Q9NRM2 450 aaPredicted RBP13.55□□□□□ -0.24
ATG4B-219ENST00000479941 ANKIB1Q9P2G1 1089 aa13.55□□□□□ -0.24
ATG4B-219ENST00000479941 MINPP1Q9UNW1 487 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms