RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 U2AF1Q01081 240 aaKnown RBP eCLIP8.79□□□□□ -13e-6■■□□□ 12.5
VCP-205ENST00000479300 TAF7Q15545 349 aaPredicted RBP8.79□□□□□ -1
VCP-205ENST00000479300 CIAPIN1Q6FI81 312 aa8.79□□□□□ -1
VCP-205ENST00000479300 NIM1KQ8IY84 436 aa8.79□□□□□ -1
VCP-205ENST00000479300 RPGRQ92834 1020 aaKnown RBP8.79□□□□□ -1
VCP-205ENST00000479300 NYXQ9GZU5 481 aa8.79□□□□□ -1
VCP-205ENST00000479300 ADARB2Q9NS39 739 aaKnown RBP8.79□□□□□ -1
VCP-205ENST00000479300 YDJCA8MPS7 323 aa8.78□□□□□ -1
VCP-205ENST00000479300 BRPF1P55201 1214 aaPredicted RBP8.78□□□□□ -1
VCP-205ENST00000479300 EIF4A1P60842 406 aaKnown RBP8.78□□□□□ -1
VCP-205ENST00000479300 C1QBPQ07021 282 aaKnown RBP8.78□□□□□ -1
VCP-205ENST00000479300 HHIPL1Q96JK4 782 aa8.78□□□□□ -1
VCP-205ENST00000479300 THUMPD2Q9BTF0 503 aaKnown RBP8.78□□□□□ -1
VCP-205ENST00000479300 BEGAINQ9BUH8 593 aa8.78□□□□□ -1
VCP-205ENST00000479300 RTFDC1Q9BY42 306 aaPredicted RBP8.78□□□□□ -1
VCP-205ENST00000479300 PNNQ9H307 717 aaKnown RBP8.78□□□□□ -1
VCP-205ENST00000479300 ZNRF3Q9ULT6 936 aa8.78□□□□□ -1
VCP-205ENST00000479300 RRP7AQ9Y3A4 280 aaKnown RBP8.78□□□□□ -1
VCP-205ENST00000479300 ATP6V0A2Q9Y487 856 aa8.78□□□□□ -1
VCP-205ENST00000479300 TAF1P21675 1872 aa8.78□□□□□ -1
VCP-205ENST00000479300 ABCC4O15439 1325 aa8.78□□□□□ -1
VCP-205ENST00000479300 FAM155AB1AL88 458 aaPredicted RBP8.77□□□□□ -1.01
VCP-205ENST00000479300 HTATSF1O43719 755 aaKnown RBP8.77□□□□□ -1.01
VCP-205ENST00000479300 RAD17O75943 681 aa8.77□□□□□ -1.01
VCP-205ENST00000479300 EGFRP00533 1210 aa8.77□□□□□ -1.01
VCP-205ENST00000479300 MYL6BP14649 208 aa8.77□□□□□ -1.01
VCP-205ENST00000479300 PPP2R1AP30153 589 aa8.77□□□□□ -1.01
VCP-205ENST00000479300 VASPP50552 380 aaPredicted RBP8.77□□□□□ -1.01
VCP-205ENST00000479300 DGKZQ13574 1117 aa8.77□□□□□ -1.01
VCP-205ENST00000479300 PDIA6Q15084 440 aa8.77□□□□□ -1.01
VCP-205ENST00000479300 GIGYF2Q6Y7W6 1299 aaKnown RBP8.77□□□□□ -1.01
VCP-205ENST00000479300 RBM17Q96I25 401 aaKnown RBP8.77□□□□□ -1.01
VCP-205ENST00000479300 CA12O43570 354 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 KIAA2012Q0VF49 1180 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 PROSER3Q2NL68 480 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 GRIPAP1Q4V328 841 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 SLC10A5Q5PT55 438 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 KIF6Q6ZMV9 814 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 CFAP44Q96MT7 982 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 ZNF408Q9H9D4 720 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 PCDH10Q9P2E7 1040 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 LRRC37AA6NMS7 1700 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 ANKRD36CQ5JPF3 1778 aa8.76□□□□□ -1.01
VCP-205ENST00000479300 ANXA1P04083 346 aa8.75□□□□□ -1.01
VCP-205ENST00000479300 HCLS1P14317 486 aaPredicted RBP8.75□□□□□ -1.01
VCP-205ENST00000479300 USP48Q86UV5 1035 aa8.75□□□□□ -1.01
VCP-205ENST00000479300 VPS33BQ9H267 617 aa8.75□□□□□ -1.01
VCP-205ENST00000479300 CDHR2Q9BYE9 1310 aa8.75□□□□□ -1.01
VCP-205ENST00000479300 SOX10P56693 466 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 HUNKP57058 714 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 DPP8Q6V1X1 898 aaPredicted RBP8.74□□□□□ -1.01
VCP-205ENST00000479300 CDC37L1Q7L3B6 337 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 SAMD7Q7Z3H4 446 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 IFNLR1Q8IU57 520 aaPredicted RBP8.74□□□□□ -1.01
VCP-205ENST00000479300 SP8Q8IXZ3 490 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 ZC3H15Q8WU90 426 aaKnown RBP8.74□□□□□ -1.01
VCP-205ENST00000479300 NLRP3Q96P20 1036 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 PLEKHF1Q96S99 279 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 KCNQ5Q9NR82 932 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 CNOT7Q9UIV1 285 aaKnown RBP8.74□□□□□ -1.01
VCP-205ENST00000479300 FBXO3Q9UK99 471 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 ZBTB12Q9Y330 459 aaPredicted RBP8.74□□□□□ -1.01
VCP-205ENST00000479300 MAPK8IP3Q9UPT6 1336 aa8.74□□□□□ -1.01
VCP-205ENST00000479300 ZNF316A6NFI3 1004 aaPredicted RBP8.73□□□□□ -1.01
VCP-205ENST00000479300 ADM5C9JUS6 153 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 NOGQ13253 232 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 PARP10Q53GL7 1025 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 PPP1R42Q7Z4L9 355 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 NLRP10Q86W26 655 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 MICALL2Q8IY33 904 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 MPNDQ8N594 471 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 ZNF428Q96B54 188 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 UTP14AQ9BVJ6 771 aaKnown RBP8.73□□□□□ -1.01
VCP-205ENST00000479300 BCL2L13Q9BXK5 485 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 DDX60Q8IY21 1712 aaKnown RBP8.73□□□□□ -1.01
VCP-205ENST00000479300 POLR2AP24928 1970 aaKnown RBP8.73□□□□□ -1.01
VCP-205ENST00000479300 ASTN2O75129 1339 aaPredicted RBP8.73□□□□□ -1.01
VCP-205ENST00000479300 RTL9Q8NET4 1388 aa8.73□□□□□ -1.01
VCP-205ENST00000479300 SCN9AQ15858 1988 aa8.72□□□□□ -1.01
VCP-205ENST00000479300 PSMD14O00487 310 aa8.72□□□□□ -1.01
VCP-205ENST00000479300 BBOX1O75936 387 aa8.72□□□□□ -1.01
VCP-205ENST00000479300 KIF23Q02241 960 aaPredicted RBP8.72□□□□□ -1.01
VCP-205ENST00000479300 TBC1D10BQ4KMP7 808 aaPredicted RBP8.72□□□□□ -1.01
VCP-205ENST00000479300 RGMBQ6NW40 437 aa8.72□□□□□ -1.01
VCP-205ENST00000479300 SUPT20HQ8NEM7 779 aa8.72□□□□□ -1.01
VCP-205ENST00000479300 PNISRQ8TF01 805 aaKnown RBP8.72□□□□□ -1.01
VCP-205ENST00000479300 RNF186Q9NXI6 227 aa8.72□□□□□ -1.01
VCP-205ENST00000479300 ERBB4Q15303 1308 aa8.72□□□□□ -1.01
VCP-205ENST00000479300 GRAPQ13588 217 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 TNIP1Q15025 636 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 RALBP1Q15311 655 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 NFE2L2Q16236 605 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 ERICH6Q7L0X2 663 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 KRT26Q7Z3Y9 468 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 GRAPLQ8TC17 118 aaPredicted RBP8.71□□□□□ -1.02
VCP-205ENST00000479300 DPF2Q92785 391 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 DBNDD1Q9H9R9 158 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 GBA2Q9HCG7 927 aaPredicted RBP8.71□□□□□ -1.02
VCP-205ENST00000479300 SAGE1Q9NXZ1 904 aa8.71□□□□□ -1.02
VCP-205ENST00000479300 TRPA1O75762 1119 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms