RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 SP8Q8IXZ3 490 aa22.71■■□□□ 1.23
VIM-204ENST00000478746 MPNDQ8N594 471 aa22.71■■□□□ 1.23
VIM-204ENST00000478746 ABCC4O15439 1325 aa22.71■■□□□ 1.23
VIM-204ENST00000478746 CDHR2Q9BYE9 1310 aa22.7■■□□□ 1.22
VIM-204ENST00000478746 KDM3BQ7LBC6 1761 aa22.69■■□□□ 1.22
VIM-204ENST00000478746 ERBB4Q15303 1308 aa22.69■■□□□ 1.22
VIM-204ENST00000478746 KIAA2012Q0VF49 1180 aa22.69■■□□□ 1.22
VIM-204ENST00000478746 THUMPD2Q9BTF0 503 aaKnown RBP22.69■■□□□ 1.22
VIM-204ENST00000478746 CNOT7Q9UIV1 285 aaKnown RBP22.69■■□□□ 1.22
VIM-204ENST00000478746 H7C1D1 291 aa22.68■■□□□ 1.22
VIM-204ENST00000478746 NOGQ13253 232 aa22.68■■□□□ 1.22
VIM-204ENST00000478746 PCDH10Q9P2E7 1040 aa22.68■■□□□ 1.22
VIM-204ENST00000478746 USP48Q86UV5 1035 aa22.67■■□□□ 1.22
VIM-204ENST00000478746 TRPM4Q8TD43 1214 aa22.67■■□□□ 1.22
VIM-204ENST00000478746 DLG5Q8TDM6 1919 aa22.67■■□□□ 1.22
VIM-204ENST00000478746 EIF2S2P20042 333 aaKnown RBP22.66■■□□□ 1.22
VIM-204ENST00000478746 HUNKP57058 714 aa22.66■■□□□ 1.22
VIM-204ENST00000478746 NFE2L2Q16236 605 aa22.66■■□□□ 1.22
VIM-204ENST00000478746 DDX46Q7L014 1031 aaKnown RBP22.66■■□□□ 1.22
VIM-204ENST00000478746 ZIC5Q96T25 663 aa22.66■■□□□ 1.22
VIM-204ENST00000478746 HCLS1P14317 486 aaPredicted RBP22.65■■□□□ 1.22
VIM-204ENST00000478746 SHTN1A0MZ66 631 aa22.64■■□□□ 1.21
VIM-204ENST00000478746 PDIA6Q15084 440 aa22.64■■□□□ 1.21
VIM-204ENST00000478746 LRP10Q7Z4F1 713 aa22.64■■□□□ 1.21
VIM-204ENST00000478746 PLEKHF1Q96S99 279 aa22.64■■□□□ 1.21
VIM-204ENST00000478746 YDJCA8MPS7 323 aa22.63■■□□□ 1.21
VIM-204ENST00000478746 GRAPQ13588 217 aa22.63■■□□□ 1.21
VIM-204ENST00000478746 MICALL2Q8IY33 904 aa22.63■■□□□ 1.21
VIM-204ENST00000478746 GRAPLQ8TC17 118 aaPredicted RBP22.63■■□□□ 1.21
VIM-204ENST00000478746 TSPYL4Q9UJ04 414 aa22.63■■□□□ 1.21
VIM-204ENST00000478746 HSP90AB3PQ58FF7 597 aa22.62■■□□□ 1.21
VIM-204ENST00000478746 TRMT112Q9UI30 125 aaKnown RBP22.62■■□□□ 1.21
VIM-204ENST00000478746 ANXA1P04083 346 aa22.61■■□□□ 1.21
VIM-204ENST00000478746 PROSER3Q2NL68 480 aa22.61■■□□□ 1.21
VIM-204ENST00000478746 RGMBQ6NW40 437 aa22.61■■□□□ 1.21
VIM-204ENST00000478746 DLK2Q6UY11 383 aa22.61■■□□□ 1.21
VIM-204ENST00000478746 NLRP10Q86W26 655 aa22.61■■□□□ 1.21
VIM-204ENST00000478746 DPF2Q92785 391 aa22.61■■□□□ 1.21
VIM-204ENST00000478746 PNNQ9H307 717 aaKnown RBP22.61■■□□□ 1.21
VIM-204ENST00000478746 ZBTB12Q9Y330 459 aaPredicted RBP22.61■■□□□ 1.21
VIM-204ENST00000478746 TNRC18O15417 2968 aaPredicted RBP22.6■■□□□ 1.21
VIM-204ENST00000478746 COPS6Q7L5N1 327 aa22.6■■□□□ 1.21
VIM-204ENST00000478746 SAMD7Q7Z3H4 446 aa22.6■■□□□ 1.21
VIM-204ENST00000478746 TMC4Q7Z404 712 aa22.6■■□□□ 1.21
VIM-204ENST00000478746 C2orf69Q8N8R5 385 aa22.6■■□□□ 1.21
VIM-204ENST00000478746 AIMP1Q12904 312 aaKnown RBP22.59■■□□□ 1.21
VIM-204ENST00000478746 TCIRG1Q13488 830 aa22.59■■□□□ 1.21
VIM-204ENST00000478746 WASHC4Q2M389 1173 aa22.59■■□□□ 1.21
VIM-204ENST00000478746 KRT26Q7Z3Y9 468 aa22.59■■□□□ 1.21
VIM-204ENST00000478746 CCDC102AQ96A19 550 aa22.59■■□□□ 1.21
VIM-204ENST00000478746 SH3TC1Q8TE82 1336 aa22.58■■□□□ 1.21
VIM-204ENST00000478746 MAPK8IP3Q9UPT6 1336 aa22.58■■□□□ 1.21
VIM-204ENST00000478746 ANKRD36CQ5JPF3 1778 aa22.58■■□□□ 1.21
VIM-204ENST00000478746 PSMD14O00487 310 aa22.58■■□□□ 1.21
VIM-204ENST00000478746 TBC1D10BQ4KMP7 808 aaPredicted RBP22.58■■□□□ 1.21
VIM-204ENST00000478746 GBA2Q9HCG7 927 aaPredicted RBP22.58■■□□□ 1.21
VIM-204ENST00000478746 LAMB2P55268 1798 aa22.58■■□□□ 1.2
VIM-204ENST00000478746 FAM155AB1AL88 458 aaPredicted RBP22.57■■□□□ 1.2
VIM-204ENST00000478746 KIF23Q02241 960 aaPredicted RBP22.57■■□□□ 1.2
VIM-204ENST00000478746 RBM26Q5T8P6 1007 aaKnown RBP22.57■■□□□ 1.2
VIM-204ENST00000478746 XAGE3Q8WTP9 111 aa22.57■■□□□ 1.2
VIM-204ENST00000478746 DCPSQ96C86 337 aaKnown RBP22.57■■□□□ 1.2
VIM-204ENST00000478746 SAGE1Q9NXZ1 904 aa22.57■■□□□ 1.2
VIM-204ENST00000478746 POLR2AP24928 1970 aaKnown RBP22.57■■□□□ 1.2
VIM-204ENST00000478746 ZNF157P51786 506 aaPredicted RBP22.56■■□□□ 1.2
VIM-204ENST00000478746 NECTIN2Q92692 538 aa22.56■■□□□ 1.2
VIM-204ENST00000478746 DBNDD1Q9H9R9 158 aa22.56■■□□□ 1.2
VIM-204ENST00000478746 NSFL1CQ9UNZ2 370 aaKnown RBP22.56■■□□□ 1.2
VIM-204ENST00000478746 TAF1P21675 1872 aa22.56■■□□□ 1.2
VIM-204ENST00000478746 PDE4DIPQ5VU43 2346 aa22.56■■□□□ 1.2
VIM-204ENST00000478746 RIMBP2O15034 1052 aa22.55■■□□□ 1.2
VIM-204ENST00000478746 TRPA1O75762 1119 aa22.55■■□□□ 1.2
VIM-204ENST00000478746 C6orf229H3BNL8 230 aa22.54■■□□□ 1.2
VIM-204ENST00000478746 EGFRP00533 1210 aa22.54■■□□□ 1.2
VIM-204ENST00000478746 RPS12P25398 132 aaKnown RBP22.54■■□□□ 1.2
VIM-204ENST00000478746 BABAM1Q9NWV8 329 aa22.54■■□□□ 1.2
VIM-204ENST00000478746 RNF186Q9NXI6 227 aa22.54■■□□□ 1.2
VIM-204ENST00000478746 ADM5C9JUS6 153 aa22.53■■□□□ 1.2
VIM-204ENST00000478746 ZNF428Q96B54 188 aa22.53■■□□□ 1.2
VIM-204ENST00000478746 SOX10P56693 466 aa22.52■■□□□ 1.2
VIM-204ENST00000478746 RIPK4P57078 832 aa22.52■■□□□ 1.2
VIM-204ENST00000478746 KCNQ5Q9NR82 932 aa22.52■■□□□ 1.2
VIM-204ENST00000478746 DOK7Q18PE1 504 aa22.51■■□□□ 1.19
VIM-204ENST00000478746 EYA3Q99504 573 aa22.51■■□□□ 1.19
VIM-204ENST00000478746 POLLQ9UGP5 575 aa22.51■■□□□ 1.19
VIM-204ENST00000478746 DUOX1Q9NRD9 1551 aa22.5■■□□□ 1.19
VIM-204ENST00000478746 ECE2O60344 883 aa22.5■■□□□ 1.19
VIM-204ENST00000478746 CELF1Q92879 486 aaKnown RBP22.5■■□□□ 1.19
VIM-204ENST00000478746 CSRNP1Q96S65 589 aa22.5■■□□□ 1.19
VIM-204ENST00000478746 GPSM2P81274 684 aa22.49■■□□□ 1.19
VIM-204ENST00000478746 SF3B3Q15393 1217 aaKnown RBP22.49■■□□□ 1.19
VIM-204ENST00000478746 SULF1Q8IWU6 871 aa22.49■■□□□ 1.19
VIM-204ENST00000478746 FAM89AQ96GI7 184 aa22.49■■□□□ 1.19
VIM-204ENST00000478746 AKAP11Q9UKA4 1901 aa22.49■■□□□ 1.19
VIM-204ENST00000478746 SLC10A3P09131 477 aa22.48■■□□□ 1.19
VIM-204ENST00000478746 KIF4BQ2VIQ3 1234 aa22.48■■□□□ 1.19
VIM-204ENST00000478746 CTU1Q7Z7A3 348 aaKnown RBP22.47■■□□□ 1.19
VIM-204ENST00000478746 REM2Q8IYK8 340 aaPredicted RBP22.47■■□□□ 1.19
VIM-204ENST00000478746 RTL9Q8NET4 1388 aa22.47■■□□□ 1.19
VIM-204ENST00000478746 LRRC37AA6NMS7 1700 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms