RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-223ENST00000475146 DPY19L2Q6NUT2 758 aa30.67■■■□□ 2.5
CPNE1-223ENST00000475146 NEURL1BA8MQ27 555 aa30.66■■■□□ 2.5
CPNE1-223ENST00000475146 IARSP41252 1262 aaKnown RBP30.66■■■□□ 2.5
CPNE1-223ENST00000475146 RRAGCQ9HB90 399 aa30.66■■■□□ 2.5
CPNE1-223ENST00000475146 CDCA7LQ96GN5 454 aa30.65■■■□□ 2.5
CPNE1-223ENST00000475146 C16orf71Q8IYS4 520 aaPredicted RBP30.64■■■□□ 2.5
CPNE1-223ENST00000475146 TAF1P21675 1872 aa30.63■■■□□ 2.49
CPNE1-223ENST00000475146 PDE8AO60658 829 aa30.63■■■□□ 2.49
CPNE1-223ENST00000475146 SP8Q8IXZ3 490 aa30.63■■■□□ 2.49
CPNE1-223ENST00000475146 CDHR2Q9BYE9 1310 aa30.63■■■□□ 2.49
CPNE1-223ENST00000475146 TMC4Q7Z404 712 aa30.62■■■□□ 2.49
CPNE1-223ENST00000475146 CELF1Q92879 486 aaKnown RBP30.62■■■□□ 2.49
CPNE1-223ENST00000475146 F6X3S4 739 aa30.61■■■□□ 2.49
CPNE1-223ENST00000475146 CCDC152Q4G0S7 254 aa30.6■■■□□ 2.49
CPNE1-223ENST00000475146 LINS1Q8NG48 757 aa30.6■■■□□ 2.49
CPNE1-223ENST00000475146 CCDC85AQ96PX6 553 aaPredicted RBP30.6■■■□□ 2.49
CPNE1-223ENST00000475146 GCKRQ14397 625 aa30.59■■■□□ 2.49
CPNE1-223ENST00000475146 DPP8Q6V1X1 898 aaPredicted RBP30.59■■■□□ 2.49
CPNE1-223ENST00000475146 UBE3BQ7Z3V4 1068 aa30.59■■■□□ 2.49
CPNE1-223ENST00000475146 LARGE2Q8N3Y3 721 aa30.59■■■□□ 2.49
CPNE1-223ENST00000475146 MPNDQ8N594 471 aa30.59■■■□□ 2.49
CPNE1-223ENST00000475146 JDP2Q8WYK2 163 aa30.59■■■□□ 2.49
CPNE1-223ENST00000475146 TOMM70O94826 608 aa30.58■■■□□ 2.49
CPNE1-223ENST00000475146 SUPT20HQ8NEM7 779 aa30.58■■■□□ 2.49
CPNE1-223ENST00000475146 DDNO94850 711 aaPredicted RBP30.57■■■□□ 2.48
CPNE1-223ENST00000475146 VEGFAP15692 232 aaPredicted RBP30.57■■■□□ 2.48
CPNE1-223ENST00000475146 SEC31BQ9NQW1 1179 aa30.57■■■□□ 2.48
CPNE1-223ENST00000475146 COL4A1P02462 1669 aa30.56■■■□□ 2.48
CPNE1-223ENST00000475146 ZNF541Q9H0D2 1346 aa30.56■■■□□ 2.48
CPNE1-223ENST00000475146 PPIP5K2O43314 1243 aa30.56■■■□□ 2.48
CPNE1-223ENST00000475146 CTSWP56202 376 aa30.56■■■□□ 2.48
CPNE1-223ENST00000475146 H7C1W4 665 aa30.55■■■□□ 2.48
CPNE1-223ENST00000475146 RPS8P62241 208 aaKnown RBP30.55■■■□□ 2.48
CPNE1-223ENST00000475146 LRRC37AA6NMS7 1700 aa30.55■■■□□ 2.48
CPNE1-223ENST00000475146 WDR90Q96KV7 1748 aa30.55■■■□□ 2.48
CPNE1-223ENST00000475146 AOC3Q16853 763 aa30.54■■■□□ 2.48
CPNE1-223ENST00000475146 RTFDC1Q9BY42 306 aaPredicted RBP30.54■■■□□ 2.48
CPNE1-223ENST00000475146 COL4A5P29400 1685 aa30.54■■■□□ 2.48
CPNE1-223ENST00000475146 FZD9O00144 591 aa30.53■■■□□ 2.48
CPNE1-223ENST00000475146 BEND3Q5T5X7 828 aa30.53■■■□□ 2.48
CPNE1-223ENST00000475146 NIM1KQ8IY84 436 aa30.53■■■□□ 2.48
CPNE1-223ENST00000475146 TRMT2AQ8IZ69 625 aaKnown RBP30.53■■■□□ 2.48
CPNE1-223ENST00000475146 MRPL50Q8N5N7 158 aaKnown RBP30.53■■■□□ 2.48
CPNE1-223ENST00000475146 SLC4A10Q6U841 1118 aa30.52■■■□□ 2.48
CPNE1-223ENST00000475146 RBM46Q8TBY0 533 aaKnown RBP30.52■■■□□ 2.48
CPNE1-223ENST00000475146 SSH1Q8WYL5 1049 aa30.52■■■□□ 2.48
CPNE1-223ENST00000475146 BCL2L13Q9BXK5 485 aa30.52■■■□□ 2.48
CPNE1-223ENST00000475146 EIF6P56537 245 aaKnown RBP30.51■■■□□ 2.47
CPNE1-223ENST00000475146 VPS33BQ9H267 617 aa30.51■■■□□ 2.47
CPNE1-223ENST00000475146 NSFL1CQ9UNZ2 370 aaKnown RBP30.51■■■□□ 2.47
CPNE1-223ENST00000475146 MYH3P11055 1940 aa30.51■■■□□ 2.47
CPNE1-223ENST00000475146 ANKRD18AQ8IVF6 992 aa30.5■■■□□ 2.47
CPNE1-223ENST00000475146 TTLL11Q8NHH1 800 aa30.5■■■□□ 2.47
CPNE1-223ENST00000475146 POTECB2RU33 542 aa30.49■■■□□ 2.47
CPNE1-223ENST00000475146 CASP7P55210 303 aa30.49■■■□□ 2.47
CPNE1-223ENST00000475146 CDC5LQ99459 802 aaKnown RBP30.49■■■□□ 2.47
CPNE1-223ENST00000475146 GREM2Q9H772 168 aa30.49■■■□□ 2.47
CPNE1-223ENST00000475146 DUOX1Q9NRD9 1551 aa30.49■■■□□ 2.47
CPNE1-223ENST00000475146 GPSM2P81274 684 aa30.48■■■□□ 2.47
CPNE1-223ENST00000475146 PLA2G12BQ9BX93 195 aa30.48■■■□□ 2.47
CPNE1-223ENST00000475146 HNRNPUQ00839 825 aaKnown RBP eCLIP30.47■■■□□ 2.47
CPNE1-223ENST00000475146 L3MBTL3Q96JM7 780 aaPredicted RBP30.47■■■□□ 2.47
CPNE1-223ENST00000475146 SMC4Q9NTJ3 1288 aa30.47■■■□□ 2.47
CPNE1-223ENST00000475146 PTPRCP08575 1304 aa30.47■■■□□ 2.47
CPNE1-223ENST00000475146 C6orf229H3BNL8 230 aa30.46■■■□□ 2.47
CPNE1-223ENST00000475146 KIAA2012Q0VF49 1180 aa30.46■■■□□ 2.47
CPNE1-223ENST00000475146 ALDH1L2Q3SY69 923 aa30.46■■■□□ 2.47
CPNE1-223ENST00000475146 SRCIN1Q9C0H9 1055 aa30.46■■■□□ 2.47
CPNE1-223ENST00000475146 GJA3Q9Y6H8 435 aa30.46■■■□□ 2.47
CPNE1-223ENST00000475146 RTL9Q8NET4 1388 aa30.45■■■□□ 2.47
CPNE1-223ENST00000475146 IQCA1LA6NCM1 817 aa30.45■■■□□ 2.47
CPNE1-223ENST00000475146 ALDH1L1O75891 902 aa30.45■■■□□ 2.47
CPNE1-223ENST00000475146 CT47B1P0C2W7 299 aaPredicted RBP30.45■■■□□ 2.47
CPNE1-223ENST00000475146 GPC2Q8N158 579 aa30.45■■■□□ 2.47
CPNE1-223ENST00000475146 HSPA6P17066 643 aa30.44■■■□□ 2.46
CPNE1-223ENST00000475146 SMC1BQ8NDV3 1235 aa30.44■■■□□ 2.46
CPNE1-223ENST00000475146 C9orf78Q9NZ63 289 aaPredicted RBP30.44■■■□□ 2.46
CPNE1-223ENST00000475146 ANKIB1Q9P2G1 1089 aa30.44■■■□□ 2.46
CPNE1-223ENST00000475146 GRM8O00222 908 aa30.43■■■□□ 2.46
CPNE1-223ENST00000475146 FSTL1Q12841 308 aa30.43■■■□□ 2.46
CPNE1-223ENST00000475146 WASHC4Q2M389 1173 aa30.43■■■□□ 2.46
CPNE1-223ENST00000475146 FAM161AQ3B820 660 aa30.43■■■□□ 2.46
CPNE1-223ENST00000475146 ZNRF3Q9ULT6 936 aa30.43■■■□□ 2.46
CPNE1-223ENST00000475146 POLLQ9UGP5 575 aa30.42■■■□□ 2.46
CPNE1-223ENST00000475146 TBC1D16Q8TBP0 767 aa30.41■■■□□ 2.46
CPNE1-223ENST00000475146 EYA3Q99504 573 aa30.41■■■□□ 2.46
CPNE1-223ENST00000475146 HACL1Q9UJ83 578 aa30.41■■■□□ 2.46
CPNE1-223ENST00000475146 LTBP1Q14766 1721 aa30.41■■■□□ 2.46
CPNE1-223ENST00000475146 SCN4AP35499 1836 aa30.4■■■□□ 2.46
CPNE1-223ENST00000475146 RIMBP2O15034 1052 aa30.4■■■□□ 2.46
CPNE1-223ENST00000475146 UFL1O94874 794 aa30.4■■■□□ 2.46
CPNE1-223ENST00000475146 ITGA6P23229 1130 aa30.4■■■□□ 2.46
CPNE1-223ENST00000475146 GPR101Q96P66 508 aaPredicted RBP30.4■■■□□ 2.46
CPNE1-223ENST00000475146 PODXL2Q9NZ53 605 aa30.4■■■□□ 2.46
CPNE1-223ENST00000475146 GGA1Q9UJY5 639 aa30.4■■■□□ 2.46
CPNE1-223ENST00000475146 SPEF2Q9C093 1822 aa30.4■■■□□ 2.46
CPNE1-223ENST00000475146 CSF1RP07333 972 aa30.39■■■□□ 2.46
CPNE1-223ENST00000475146 IGHMBP2P38935 993 aaKnown RBP30.39■■■□□ 2.46
CPNE1-223ENST00000475146 TAF1DQ9H5J8 278 aaPredicted RBP30.39■■■□□ 2.46
CPNE1-223ENST00000475146 CHMP3Q9Y3E7 222 aa30.39■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms