RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 SIL1Q9H173 461 aa12.68□□□□□ -0.38
PRPF38A-202ENST00000474048 PNPLA7Q6ZV29 1317 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 HCLS1P14317 486 aaPredicted RBP12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 FOXO4P98177 505 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 NUCB1Q02818 461 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 NFIXQ14938 502 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 ERFEQ4G0M1 354 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 AMIGO3Q86WK7 504 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 COL23A1Q86Y22 540 aaPredicted RBP12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 CCDC85AQ96PX6 553 aaPredicted RBP12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 CDC5LQ99459 802 aaKnown RBP12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 LNPKQ9C0E8 428 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 BCL2L12Q9HB09 334 aa12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 DDX60Q8IY21 1712 aaKnown RBP12.67□□□□□ -0.38
PRPF38A-202ENST00000474048 IGHMBP2P38935 993 aaKnown RBP12.66□□□□□ -0.38
PRPF38A-202ENST00000474048 FAM161AQ3B820 660 aa12.66□□□□□ -0.38
PRPF38A-202ENST00000474048 EPHA10Q5JZY3 1008 aa12.66□□□□□ -0.38
PRPF38A-202ENST00000474048 CLASRPQ8N2M8 674 aaKnown RBP12.66□□□□□ -0.38
PRPF38A-202ENST00000474048 KAZALD1Q96I82 304 aa12.66□□□□□ -0.38
PRPF38A-202ENST00000474048 MPHOSPH8Q99549 860 aa12.66□□□□□ -0.38
PRPF38A-202ENST00000474048 ANO8Q9HCE9 1232 aaPredicted RBP12.66□□□□□ -0.38
PRPF38A-202ENST00000474048 SERPINB2P05120 415 aa12.65□□□□□ -0.38
PRPF38A-202ENST00000474048 ITGA6P23229 1130 aa12.65□□□□□ -0.38
PRPF38A-202ENST00000474048 RPGRQ92834 1020 aaKnown RBP12.65□□□□□ -0.38
PRPF38A-202ENST00000474048 CNNM1Q9NRU3 951 aa12.65□□□□□ -0.38
PRPF38A-202ENST00000474048 FBXO3Q9UK99 471 aa12.65□□□□□ -0.38
PRPF38A-202ENST00000474048 PA2G4Q9UQ80 394 aaKnown RBP12.65□□□□□ -0.38
PRPF38A-202ENST00000474048 IFIT2P09913 472 aaKnown RBP12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 IL15P40933 162 aaPredicted RBP12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 MSL1Q68DK7 614 aa12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 DDX46Q7L014 1031 aaKnown RBP12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 TTLL11Q8NHH1 800 aa12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 RHPN1Q8TCX5 695 aa12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 UPF1Q92900 1129 aaKnown RBP eCLIP12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 COPRSQ9NQ92 184 aa12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 NOP58Q9Y2X3 529 aaKnown RBP12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 CASZ1Q86V15 1759 aa12.64□□□□□ -0.39
PRPF38A-202ENST00000474048 CSF1RP07333 972 aa12.63□□□□□ -0.39
PRPF38A-202ENST00000474048 MMP10P09238 476 aa12.63□□□□□ -0.39
PRPF38A-202ENST00000474048 LDHAL6AQ6ZMR3 332 aa12.63□□□□□ -0.39
PRPF38A-202ENST00000474048 ANKRD18AQ8IVF6 992 aa12.63□□□□□ -0.39
PRPF38A-202ENST00000474048 SYNE4Q8N205 404 aa12.63□□□□□ -0.39
PRPF38A-202ENST00000474048 SLC16A10Q8TF71 515 aa12.63□□□□□ -0.39
PRPF38A-202ENST00000474048 GREM2Q9H772 168 aa12.63□□□□□ -0.39
PRPF38A-202ENST00000474048 SPEF2Q9C093 1822 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 RTL9Q8NET4 1388 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 ABCC12Q96J65 1359 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 EYA2O00167 538 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 POLRMTO00411 1230 aaKnown RBP12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 SMARCA5O60264 1052 aaPredicted RBP12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 CIAO1O76071 339 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 PTPN12Q05209 780 aaKnown RBP12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 SLC10A5Q5PT55 438 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 PRR5LQ6MZQ0 368 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 KLHDC4Q8TBB5 520 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 TMX4Q9H1E5 349 aaPredicted RBP12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 IL1RAPL2Q9NP60 686 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 CEP126Q9P2H0 1117 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 AKAP2Q9Y2D5 859 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 RIC1Q4ADV7 1423 aa12.62□□□□□ -0.39
PRPF38A-202ENST00000474048 POLD1P28340 1107 aa12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 TM4SF1P30408 202 aa12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 METTL24Q5JXM2 366 aa12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 AACSQ86V21 672 aa12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 CNKSR2Q8WXI2 1034 aa12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 RBM17Q96I25 401 aaKnown RBP12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 ZNF594Q96JF6 807 aaPredicted RBP12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 MROH5Q6ZUA9 1318 aa12.61□□□□□ -0.39
PRPF38A-202ENST00000474048 ERC2O15083 957 aa12.6□□□□□ -0.39
PRPF38A-202ENST00000474048 PDE6BP35913 854 aa12.6□□□□□ -0.39
PRPF38A-202ENST00000474048 RFX5P48382 616 aaPredicted RBP12.6□□□□□ -0.39
PRPF38A-202ENST00000474048 SF3B3Q15393 1217 aaKnown RBP12.6□□□□□ -0.39
PRPF38A-202ENST00000474048 GORABQ5T7V8 394 aa12.6□□□□□ -0.39
PRPF38A-202ENST00000474048 CCDC24Q8N4L8 307 aa12.6□□□□□ -0.39
PRPF38A-202ENST00000474048 MX1P20591 662 aa12.59□□□□□ -0.39
PRPF38A-202ENST00000474048 DDR1Q08345 913 aa12.59□□□□□ -0.39
PRPF38A-202ENST00000474048 TFCP2Q12800 502 aa12.59□□□□□ -0.39
PRPF38A-202ENST00000474048 TNRC6CQ9HCJ0 1690 aaKnown RBP12.58□□□□□ -0.4
PRPF38A-202ENST00000474048 KCNJ4P48050 445 aa12.58□□□□□ -0.4
PRPF38A-202ENST00000474048 CASC1Q6TDU7 716 aa12.58□□□□□ -0.4
PRPF38A-202ENST00000474048 NEUROD6Q96NK8 337 aa12.58□□□□□ -0.4
PRPF38A-202ENST00000474048 BRIP1Q9BX63 1249 aa12.58□□□□□ -0.4
PRPF38A-202ENST00000474048 NRXN2Q9P2S2 1712 aa12.58□□□□□ -0.4
PRPF38A-202ENST00000474048 EIF5BO60841 1220 aaKnown RBP12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 R3HDM1Q15032 1099 aaKnown RBP12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 LRRC24Q50LG9 513 aa12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 TNNI3KQ59H18 835 aa12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 SEC31BQ9NQW1 1179 aa12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 FPGT-TNNI3KV9GXZ4 949 aa12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 LRP5O75197 1615 aa12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 AOX1Q06278 1338 aa12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 TTC41PQ6P2S7 1318 aa12.57□□□□□ -0.4
PRPF38A-202ENST00000474048 SASH1O94885 1247 aa12.56□□□□□ -0.4
PRPF38A-202ENST00000474048 IFIT1P09914 478 aaKnown RBP12.56□□□□□ -0.4
PRPF38A-202ENST00000474048 SLC5A1P13866 664 aa12.56□□□□□ -0.4
PRPF38A-202ENST00000474048 PDE4AP27815 886 aa12.56□□□□□ -0.4
PRPF38A-202ENST00000474048 RPS8P62241 208 aaKnown RBP12.56□□□□□ -0.4
PRPF38A-202ENST00000474048 GRAPQ13588 217 aa12.56□□□□□ -0.4
PRPF38A-202ENST00000474048 PUM3Q15397 648 aaKnown RBP12.56□□□□□ -0.4
PRPF38A-202ENST00000474048 ATP2B3Q16720 1220 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms